Planktothrix pseudagardhii: NO713_03678
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Entry
NO713_03678 CDS
T08299
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppsu
Planktothrix pseudagardhii
Pathway
ppsu03030
DNA replication
ppsu03410
Base excision repair
ppsu03420
Nucleotide excision repair
ppsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NO713_03678 (ligA)
03410 Base excision repair
NO713_03678 (ligA)
03420 Nucleotide excision repair
NO713_03678 (ligA)
03430 Mismatch repair
NO713_03678 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsu03032
]
NO713_03678 (ligA)
03400 DNA repair and recombination proteins [BR:
ppsu03400
]
NO713_03678 (ligA)
Enzymes [BR:
ppsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NO713_03678 (ligA)
DNA replication proteins [BR:
ppsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NO713_03678 (ligA)
DNA repair and recombination proteins [BR:
ppsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NO713_03678 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NO713_03678 (ligA)
MMR (mismatch excision repair)
DNA ligase
NO713_03678 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NO713_03678 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
RNA_pol_A_CTD
Dna2
Motif
Other DBs
NCBI-ProteinID:
CAD5968749
UniProt:
A0A9W4DA23
LinkDB
All DBs
Position
I:4309455..4311494
Genome browser
AA seq
679 aa
AA seq
DB search
MTEATQKMQQRVEELRKLLQKASYEYYVLDAPTMEDSIYDQLYRELQDLEQKYPELITLD
SPTQRVGERPATQFQSVQHNIPLYSLENAFNFNELKTWQDRGQKIATNSSKLPTYVCELK
IDGSALALTYENGILVRGATRGDGITGEEITQNVKTIRSIPLKLEGENPPALVEVRGEAF
LSLTVFEQINQERKQAGEALFANPRNAAAGTLRQLDSKIVAQRKLDFFAYTLQIPQQDNL
EITDFQTQWDNLELLQTMGFKVNPNRQVCSNLEEVIKYCEYWDQERHNLPYMTDGVVIKI
NPLSLQKKLGFTQKFPRWAIAYKYPAEEAPTQVKSVTVQVGRTGALTPVAELNPILLAGT
TVQRATLHNRDRITELDLHLGDTVIVRKAGEIIPEVLRVLLELRPKDAKRFEMPTHCPEC
GQPVVQPVGEAVTRCINESCPAILQGSLIHWCSRDALDINGIGDKLVQQLVSKKLVNSVA
DLYDLTVEKLMVLDRMGEKSATKIMNAIATSKTQPWSRVLYGLGIRHVGSVNAELITQKF
KSVEQLTQASATDIEGVYGIGPEIAYSVYQWFNLPANQDLIERLKLAELQLANSEKINYN
ITNRSQYLAGKTFVITGTLPTLKRDEAKKLIQNAGGKVTESVSKKTDYVVVGEEAGSKLK
KAQDLGITLLSEEELLTLL
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagctacccaaaaaatgcaacaacgagttgaagaattaagaaaattattgcaa
aaagctagttatgaatattatgtcttggatgctccaacaatggaggattctatttatgat
caattatatcgagaactgcaagatttagaacaaaaatatcctgaattaattaccttagat
agtccgacccaacgagttggagaaagacctgctacccaatttcaatctgttcaacataat
attcctttatatagtttagaaaatgcctttaattttaacgagttaaaaacttggcaagat
cgaggacaaaaaatagccacaaattcctccaaattaccgacttatgtttgtgaattaaaa
atagatggttcagccttagcattaacttatgaaaacggaatattagttcgaggcgcaacg
cgaggagatggaataaccggggaagaaattactcaaaatgttaaaacaattcgttccatc
cccttaaaattagaaggagaaaatccacctgctttagttgaagtacgaggagaagctttt
ttatccttaactgtatttgaacaaattaatcaagaacgaaaacaagcaggagaggcgtta
tttgctaatccgagaaatgctgctgctggaactttaagacaattagattctaaaattgta
gctcaacggaagcttgatttttttgcttatactttacaaattccccaacaagataattta
gaaattactgatttccaaacccaatgggataatttagaattattgcaaacaatgggattt
aaagttaatccaaatcgtcaagtctgttctaatttagaagaagtgataaaatattgtgaa
tattgggatcaagaacggcataatttaccttatatgactgatggggttgtaattaaaatt
aatcctttgtctttacagaaaaaattaggatttactcaaaaattcccccggtgggcgatc
gcttataaatatcccgccgaagaagccccaacgcaagtaaaatctgtcacagtacaagtg
gggagaactggggcgttaaccccggttgcagaacttaaccccattttactcgcaggaact
acggttcaacgagcaacattacataatcgcgatcgcattactgagttagatttgcatctc
ggtgacactgtaattgtacggaaagccggggaaattattcccgaagtgctgagagtctta
ttagaattacgccccaaggacgctaaacggtttgaaatgcccacccattgtcccgaatgc
ggccaacccgttgtacaacctgtgggagaagcagtgacgcgatgtattaatgagtcttgt
ccggcaattttacaaggatctttgattcattggtgttccagagatgccttagatattaat
ggcattggggataaattagtacaacaattagtcagtaaaaaattagttaattctgtagct
gatttatatgatttaaccgttgaaaaattaatggttttagaccgcatgggggaaaaatca
gccactaaaattatgaatgcgatcgctacctctaaaactcaaccttggtcgcgggtatta
tatgggttaggcattcgtcacgttggcagtgtcaacgcggaattaattactcaaaaattt
aaaagtgttgaacagttaacccaagcatctgccacggacattgaaggggtttatggaatt
gggccagaaattgcctattcagtttatcaatggtttaatcttcccgcaaatcaagactta
attgaacgattaaaactcgcagaattacagcttgctaattctgaaaaaataaattataat
ataactaatagatctcaatatttagcaggtaaaacttttgtaatcacaggaactttaccc
actttaaaacgagatgaagctaaaaaattaattcaaaatgcgggcggaaaagtaacggaa
tcggtgagtaaaaaaactgattatgttgtggtaggagaagaagccggatctaaactcaaa
aaagcccaagatttaggaattaccctgttatccgaagaagaattattaaccttactgtag
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