Persicobacter psychrovividus: PEPS_18950
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Entry
PEPS_18950 CDS
T09740
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppsv
Persicobacter psychrovividus
Pathway
ppsv03030
DNA replication
ppsv03410
Base excision repair
ppsv03420
Nucleotide excision repair
ppsv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PEPS_18950 (ligA)
03410 Base excision repair
PEPS_18950 (ligA)
03420 Nucleotide excision repair
PEPS_18950 (ligA)
03430 Mismatch repair
PEPS_18950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsv03032
]
PEPS_18950 (ligA)
03400 DNA repair and recombination proteins [BR:
ppsv03400
]
PEPS_18950 (ligA)
Enzymes [BR:
ppsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PEPS_18950 (ligA)
DNA replication proteins [BR:
ppsv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PEPS_18950 (ligA)
DNA repair and recombination proteins [BR:
ppsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PEPS_18950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEPS_18950 (ligA)
MMR (mismatch excision repair)
DNA ligase
PEPS_18950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PEPS_18950 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
BDC99614
LinkDB
All DBs
Position
complement(2259020..2261029)
Genome browser
AA seq
669 aa
AA seq
DB search
MATTEIKKEMDSLAKVINHHNHLYYQEDRSEISDQEFDQLLNRLIGLEKDYPEFADPNSP
TQRVGGTVTKNFENVVHKYRMLSLGNTYSEEDLREFDQRVRKGLEGEGIAEELEYICELK
FDGVAISLTYRNGQLALATTRGDGTRGDNITANAKTIRTLPLQLQGQLPEEFEVRGEVFM
SHKEFERLNATLAEGDKYANPRNTTSGSLKLQDSALVAKRKLDCYLYAVLGENLPFTTHE
EALETIKSWGFNVSQTYRKCTTIEQVLTYIAEWEEKRKSLPLETDGIVIKVNSYKQQQAL
GYTAKSPRWAIAYKYQAEVGITRLSSVTYQVGRTGSITPVANLEPVALAGTTVRRASLHN
ANEIERLDLHQSDMVTVEKGGEIIPKITGVLTEERQEAAEAIQFIEECPECKTTLIRVEG
EANHYCPNTTGCPPQIKGKIEHFIQRKAMNIDSLGERTIDQLFQRGLVKNVADLFDLTIE
DALSLEGFKEKSAQKMVEGIKQSLATPFEQVLFALGIRYVGQTVAVKLAEHFEQMETLRY
APLEELEAVPDVGKQIAKSVVDYFNDEKNTQIVERLEQAGLKMKIEAVDLGDNDQLGGKS
FCLSGKFSTKKSILEGRIKASGGKVMSSFSKKLDYLVSNSEKETTKTKKAKEMGIAILSE
VQLEQMLEN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacagaaataaaaaaggagatggattctttggccaaggtcatcaaccatcat
aatcatctttattatcaggaagaccgttccgaaatttcggatcaggaatttgaccaattg
ctgaatcggctgattgggctggagaaggattatcctgaatttgccgatcctaactctcca
acgcaaagggtaggtgggacagtcaccaaaaattttgaaaatgtggttcataaataccgc
atgctttctttgggaaacacctactcggaggaagatttgagagagttcgatcagcgggtg
cgcaaaggacttgaaggggaaggcattgctgaggaactggaatatatctgtgagctgaaa
tttgacggggtggcgatctccctaacctatcgcaatgggcaactggcactggctaccacc
cgtggcgatggtacccgtggggataacattaccgccaacgcaaaaaccattcgcactttg
cctttgcagctgcaggggcaactgcctgaggagtttgaagtgcgtggtgaggtgtttatg
tcgcacaaagaatttgaacgattgaatgccactttggctgaaggcgataagtatgccaac
ccgagaaacaccacctcgggaagtctgaaattgcaggactccgctttggtggccaaacgt
aaacttgattgctatttgtatgcggttttaggggagaatcttccctttactacacatgag
gaagcacttgaaaccattaagtcgtggggctttaacgtctctcagacttaccgaaaatgt
acgaccatcgagcaggtattgacttacattgctgaatgggaggaaaaaagaaaatcattg
cctttggagaccgacggcatcgtgatcaaagtgaacagctataaacagcaacaagctttg
ggctacacggccaaatcgcctcgttgggcaattgcctataaatatcaggcggaagtgggc
atcacccgtctttcctctgtaacctatcaggtagggcgcacgggatcaattacacctgtg
gcgaacctggagcctgttgctttggcgggaaccaccgtcaggagggcatctttgcacaat
gccaacgagatcgaacggctcgatttacatcagtcggatatggtgacggtggagaagggc
ggagagattattccgaaaattaccggtgtgcttactgaggaacgtcaggaagccgcggaa
gccattcagttcattgaagaatgtcctgagtgtaagacgactttgattcgtgtggaagga
gaggctaaccactattgtccgaatacgacaggttgcccaccgcagattaaaggtaaaatt
gaacactttattcagcgaaaagcgatgaatattgactctttgggagagcggacaatcgat
cagctttttcaaagaggtttggtgaagaatgtggccgatctgtttgacttgacaatcgag
gatgctttaagcctcgaaggtttcaaagagaaatctgcccaaaaaatggtcgagggaatc
aaacaatccttggcgaccccttttgagcaggtgctttttgcactcggcattcgctacgtc
ggacaaactgtggccgtaaagcttgcggaacatttcgagcagatggaaacgcttcgttat
gcaccgcttgaagaacttgaggccgtgcctgatgtcgggaagcaaatcgccaaaagcgtt
gttgattattttaatgatgaaaaaaatacacagatcgttgaacgacttgaacaagcaggc
ctgaagatgaaaatcgaggcggtggatttaggggacaacgatcaacttggcgggaagagt
ttttgtctgtcgggtaaattttctacaaagaaaagcatattggaaggccgaattaaggca
tctgggggaaaagtgatgtcctcattttctaaaaaattagactatcttgtgtcgaattca
gaaaaagaaacgacaaaaaccaagaaagctaaggagatggggatagcgattttgtcggaa
gtacagttagaacaaatgttggaaaattag
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