Pseudomonas putida S16: PPS_3678
Help
Entry
PPS_3678 CDS
T01570
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03030
DNA replication
ppt03410
Base excision repair
ppt03420
Nucleotide excision repair
ppt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPS_3678
03410 Base excision repair
PPS_3678
03420 Nucleotide excision repair
PPS_3678
03430 Mismatch repair
PPS_3678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppt03032
]
PPS_3678
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_3678
Enzymes [BR:
ppt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PPS_3678
DNA replication proteins [BR:
ppt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPS_3678
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PPS_3678
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPS_3678
MMR (mismatch excision repair)
DNA ligase
PPS_3678
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PPS_3678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AEJ14219
LinkDB
All DBs
Position
complement(4151997..4154327)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEYPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQPGAVDYSCEPKLDGLAV
SLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRVGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLEFDQIVGLEGFAEVSSKKLLDAIEASKRPGLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQAEAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKEK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLGEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccacgaactgcgtgccgagctcgaccagcacaactatcgc
tactacgtgctcgatgagccaagcgtgcccgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgcttgaagccgaatacccgcacctggtaacccccgactcgcccacccagcgc
gtcgggggcgcagccctggccgcgttcagccaggtccgccacgaagtgcccatgctcagc
ctgggcaacgctttcgaagaagccgacctgcgtgagttcggccgccgcgtggtagacggc
ctcgaccagcccggtgcggtcgactacagctgcgagcccaagctcgacggcctggccgtg
agcttgctgtaccgcgacggtctgctcgtacagggcgccacccgtggcgacggcaccacc
ggcgaagacatcagtgccaacgtacgcaccgtgcgcaacatcccgctcaggctgcaaggc
gagggatggcctgcggtgctggaggtgcgcggcgaggtttacatgagcaaggccggtttc
gaccggctcaacgccgcccaggccgaagccggtggcaagaccttcgccaacccgcgcaac
gccgcagccggcagcctgcgtcagctggactcgaaaatcaccgccagccgcccgctggaa
ttctgctgctatggcgtcggccaggtgtccgcgagcatcggcgacagccacatcggcatc
ctcgaacagctcaaggcgtgggggttgccgatcagccgcgaactcaagcatgccgccggt
atcgaagaatgcctggcctactatcgcgacatcggcgagcgacgcaacagcttgccctac
gaaatcgacggcgtggtgttcaaggtcaacagcctggccgcccagcgcgaactgggcttc
cgtgcccgtgagccccgctgggcgattgcccacaagttcccggccatggaagagctgacc
gaggtgctggatgtcgagttccaggtcggccgcaccggcgccgtaacgcccgtggcacgc
ctgaagccggtcaaggtggccggtgtgaccgtgtccaacgctaccctgcacaacatggac
gaaatcgcccgcctgggcctgcgcgttggcgacacggttatcatccgccgcgccggtgac
gtgattccgcaggtgatgcaggtggtgctggagcgccgcccagaggatgcgcgcccggtg
caggtgccgagtgagtgcccggtatgcggctcgcaggtcgagcgtacccagttggtcaag
cgtagcaagggcaaggaaacaaccagcgagggggcggtgtaccgctgcgtcggtcgcctg
gcctgtggcgcccaactcaagcaggcgatcatccactacgtgtcacgccgcgccatggac
atcgatggcctgggcgagaagagcgtcgagcaactggtggacgaaggcctgatcggttcg
ccggccgacctgtacaagctggaattcgaccagatcgtcggcctggaaggctttgccgaa
gtgtccagcaagaagctgctggatgccatcgaagccagcaagcgcccgggcctggcgcgc
ttcatctacgccctgggtatcccggacgtaggcgaggagaccgccaaggtgctggcccgc
tcgctgggcagcctggcgcgggtgcagcaggcgctgccgcaggtgctcacctacctgccg
gacatcggcctggaggtggcgtacgagatccacaacttcttcgaggacgagcacaaccgc
aaggtcatcaagcagttgctcgacagcggcatgcaactgcaggacgaaggcgagctggct
gccgagttcgccgccagcaccaccctggccggcatgatcgccaagctcgacatcgcctcg
gttggcccgaccggtgccgagaagctggtggccaagctagacagcctggacaagatcatc
gccgccgatggtatcgacctgcgccaggccctggcggccaagcaggccgaagccgtgcgc
gagttcttcaaggatgaagccaaccagaagctggcccgggacatcgaggcacagttgctg
gcgttcggcatgcactggagcagcgagaagaaagtggccgaaggcttgccgctggccggc
cagacctgggtgctgaccggcaccctggagcgcatgagccgcgacatcgccaaggaaaag
ctggaaagcctgggggccaaggtggcgggttcggtatccggcaagacccactgcgtggtg
gcggggccgggggcggggtccaagctggccaaggccagtgagttgggtgtgaaggtgctt
gatgaagatgccttcgtcaccttcctgggcgaacagggcatcgctgtctga
DBGET
integrated database retrieval system
