Pseudomonas putida S16: PPS_4812
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Entry
PPS_4812 CDS
T01570
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03030
DNA replication
ppt03410
Base excision repair
ppt03420
Nucleotide excision repair
ppt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPS_4812
03410 Base excision repair
PPS_4812
03420 Nucleotide excision repair
PPS_4812
03430 Mismatch repair
PPS_4812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppt03032
]
PPS_4812
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_4812
Enzymes [BR:
ppt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PPS_4812
DNA replication proteins [BR:
ppt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPS_4812
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PPS_4812
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPS_4812
MMR (mismatch excision repair)
DNA ligase
PPS_4812
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PPS_4812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
RNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AEJ15341
LinkDB
All DBs
Position
5454764..5456473
Genome browser
AA seq
569 aa
AA seq
DB search
MLAMPLMLLFALLLTLNAPLARAATCPTWNPQQVEAEVSRLRATLARWDDHYHRQGIALV
ADELYDQSRQHLAHLQQCFGITTTPSPLASAGGPIPHPVPHTGVDKLADRQAVERWLAGK
ADVWVQPKVDGVAVSLIYRQGRLVQLISRGDGVQGHDWSRHIPLLVEINRQLPQAIDLQL
QGELYLRLDAHVQARAGSANARGTVAGLLARKQLGREQGERIGLFVWDWPQGPEQQAERL
AKLAELGFAHSQDYSVAIETADDAAHWREYWYRSPLPFATDGVVLRQGVRPPSERWQAKA
PYWIAAWKHPYTQALAEVREVRFRVGRTGRVTPVLHVLPVTLDDRRITQVSLGSLARWRK
LDIRPGDQVAVSLAGLTIPRLEQVVHRAAERQPVIAPAPGQHHAHSCWQISEGCEDQFIA
RLTWLSGKQGLALPRTGPGTWRRLVAAGLVTSMTDWLHLDAERLAQVAGISDTTAAQLLG
SFDQARSRPFAQWLRGLGAPTPTRMQVTGDWLELAARTSLEWQAMPGIGEKRGEQLAGFF
ATTEVQAIATQLATAGIDGFRIDRQSIEQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgctggccatgccgctcatgctgcttttcgccctactgttgacgttgaatgctcccctg
gcccgtgccgccacatgtcccacctggaacccgcaacaagtcgaggctgaagtgagccga
ctgcgcgccacgcttgcccgctgggacgaccattatcatcgtcagggcatcgcattggtg
gctgatgaactatatgaccagagccgccagcacctggcgcacctgcagcaatgctttggc
atcacgactaccccgtccccgctggccagcgctggcgggccaattccgcatccggtgccg
cacaccggcgtcgacaagctggccgaccgtcaggctgtagaacgctggctggccggcaag
gcagatgtatgggtgcaaccaaaggtcgatggcgtagcggtctccctcatctaccgtcag
ggccggctggtgcagttgatcagccggggggacggcgtgcaggggcacgactggagccgc
cacatccccctgctcgtcgaaatcaatcggcagctgccccaggccattgacctgcaactg
cagggcgaactgtacctgcgcctggacgcgcatgtgcaagcccgggcaggcagcgccaac
gcccgagggacagtagccgggctgctggctcgcaagcagctgggtcgtgagcaaggtgag
cgcatcggcctgttcgtgtgggactggccgcagggccccgagcagcaggccgaacgcctc
gcgaaactggcggaactgggttttgcgcacagccaggattacagcgtcgccatagaaaca
gcagacgatgcagcgcactggcgcgagtactggtaccgctcacccctgcccttcgccacc
gatggcgttgtgctgcgccaaggcgtccggcctccgtccgagcgctggcaggccaaggcg
ccctactggatcgcggcgtggaagcacccgtacacgcaagccttggccgaagtgcgcgaa
gtacgcttccgcgtcggccgtaccggcagggttacgccagtcttgcatgtactgccggtt
accctggatgaccggcgaatcacccaggtgagcctgggatcgctggcacgttggcgcaag
ctcgacatccgccccggtgaccaggtggccgtcagccttgccgggctgaccatcccacgc
ctggagcaagtggtgcaccgcgccgccgagcgccaaccggtgatcgcaccagcgcccggc
cagcatcatgcccacagttgctggcagatcagcgaaggctgcgaggaccagttcattgcc
cgcctcacctggctcagcggcaagcaggggctggccctgccgcgcaccggccctggtacc
tggcgccgactggtggctgccgggctggtgacctcgatgaccgactggctgcatctggat
gccgagcgcctggcccaggtagcgggtatcagtgacacaacggctgcgcagttgctgggc
agtttcgaccaagctcgctcacggccctttgcccaatggctgcgcgggcttggcgcgcct
acacccaccaggatgcaggtaacaggcgactggctggagctggctgcccgcacgagtctt
gaatggcaagccatgcccggtatcggcgaaaagcgcggagaacagcttgctggttttttt
gcaaccaccgaggttcaagccattgcaacgcaactggcgacggcagggatcgacggattc
cggatcgacaggcaaagcatcgagcaatga
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