Pseudomonas putida KT2440: PP_1092
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Entry
PP_1092 CDS
T00114
Symbol
nth
Name
(GenBank) DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PP_1092 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_1092 (nth)
Enzymes [BR:
ppu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PP_1092 (nth)
DNA repair and recombination proteins [BR:
ppu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PP_1092 (nth)
Prokaryotic type
PP_1092 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Ogg-HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AAN66717
UniProt:
Q88NW2
LinkDB
All DBs
Position
complement(1250079..1250717)
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AA seq
212 aa
AA seq
DB search
MNAAKRLEIFRRLHEDNPDPKTELAYTTPFELLVAVTLSAQSTDVGVNKATARLFPVANT
PEAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHDSQVPQTREALEALPGVGRK
TANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKTVLEVEKKLLKFVPKDYLLDAHHWLI
LHGRYVCQARKPRCGSCRIEDLCEYKHKTSDD
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgccaaacgcctggagatttttcgcaggctgcacgaagacaaccccgaccca
aagaccgaactggcctacacgaccccgtttgaactgctggtcgccgtgacactgtccgcg
caatccaccgacgtcggcgtcaacaaggccactgcccgcctgttccccgtcgccaacacc
cccgaggccatctatgccctgggcgttgaaggcctcagcgaatacatcaagacaatcggg
ctttacaacagcaaggccaagaatgtcatagaagcgtgccggctgctgatcgagcgccac
gacagccaggtaccgcaaacccgcgaagcgctggaggcgctacccggcgtcggccgcaaa
accgccaacgtggtgctaaacacggcgtttcgccaaccggccatggccgtggatacccat
atcttccgggtgagtaaccgcacaggcatcgcgccaggcaaaacggtgctggaagtggaa
aagaaactgctcaagtttgtacccaaggactacctgctcgacgcccaccactggctgatc
ctgcacgggcgctacgtgtgccaggcgcgcaagccaaggtgcggcagctgcaggatcgaa
gatttgtgcgagtacaagcacaaaacctccgacgattga
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