Pungitius pungitius (ninespine stickleback): 119195186
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Entry
119195186 CDS
T07626
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04115
p53 signaling pathway
ppug04145
Phagosome
ppug04148
Efferocytosis
ppug04350
TGF-beta signaling pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119195186 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119195186 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119195186 (thbs1b)
04148 Efferocytosis
119195186 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
119195186 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119195186 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119195186 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119195186 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119195186 (thbs1b)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Phagocytosis
Opsonins
119195186 (thbs1b)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119195186 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
EGF
TSP1_CCN
cEGF
Motif
Other DBs
NCBI-GeneID:
119195186
NCBI-ProteinID:
XP_037305825
LinkDB
All DBs
Position
20:11910315..11922197
Genome browser
AA seq
1165 aa
AA seq
DB search
MKLTGIFLLLMLWTCEGARVAESRDDNSVFDLFEHVQVPKKSQAVTLVKGDDPYSPAYKI
LNPDLIPPVSESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLFAGCEEVNTAELDA
PIQSILTLETPDSAQLRIGKGAVRDRFMGVLQNVRFVFGASLEDVLRNKGCQSSLTADSM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSSELRQMTD
ENKLIKNRVGVCLHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANATVPDG
ECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTRDCYL
QECDKRFKQDGSWSHWSPWSSCSVSCGAGVITRIRLCNSPTPQLGGKVCEGEGRQTEKCQ
ESPCPINGNWGPWSPWDACTLTCGSGVQTRKRMCNDPAAQYGGKECVGYAKDTQTCNKKS
CPVDGCLSNPCFAGSKCISFPDGSWKCGKCPIGYTGNGIKCKDVDECKEVPDACFEFNGV
HRCENTDPGYNCLPCPPRYAGPQPFGRGVAQAAAKKQVCTARNPCLDGSHDCNKNARCNY
LGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNLPNSG
QEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNSNPDQ
TDTDNNGEGDACSVDIDGDGILNEKDNCPLVYNVDQKDTDLDGVGDMCDNCPLEHNPDQV
DSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDNDGIPD
DKDNCRLAFNPDQLDADGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQMVPL
DPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDDYAGF
VFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKMVNSTTGPGEHLRNALWHTGN
TPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGNIYDKTYAG
GRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacgggaatatttttgctattgatgctctggacctgcgagggtgcgcgagtc
gcagagagtcgagacgacaacagcgtgttcgacttgttcgagcacgtccaagtccccaag
aaaagccaagcggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtctccgagagtgcctttcgggacctgatcgactcc
atccacgccgagcgcggattcctcctgctgctcaacttcaagcagttcaagcgcacccgc
ggcagcctgctgaccgtggagaagcgggacggctccggacccgtgttcgagatcgtctcc
aacgggaaggcgaacaccttggacatcgttttctccaccgagaacaagcagcaggtggtt
tccatcgaagacgtggatctggccacgggccactggaagaacatcacgctgttcgtccag
gaggaccgggcgcagctgttcgcgggatgcgaggaggtgaacaccgcggagctggacgcg
cccatccagagcatcctgacgctggagacgccggacagcgcgcagctcaggatcggcaag
ggagccgtgagggacaggttcatgggcgtcctgcaaaacgtgaggtttgtgtttggagca
tcactggaagacgtcctccgcaacaaaggatgccaaagctccttgacggctgactccatg
atcctggagaacctcaacggttcctcagccatcagaaccgaatacactggacacaaaacc
aaagacctgcagatggtctgtggcttctcctgtgaggacctggtgagcatgtttaaggag
ctgaagggcctcggtgtggtggtcaaggagctgtccagtgaactccgccagatgacggat
gagaacaagctgattaagaaccgcgtcggcgtctgcctccacaacggcatcgtgcacaag
aacaaagacgagtggaccgtcgacgactgcaccgagtgcacttgtcagaactcggctact
gtgtgccgcaagatctcctgccccctgatcccctgtgctaatgctactgttcctgatgga
gagtgctgcccacgctgtggaacaccgagcgactacgcagaagacggctggtcgccgtgg
tctgaatggacccattgttccgtgtcgtgtgggcggggcatccagcagcgtgggcgctct
tgcgaccgcatcaataacaactgcgagggcacctctgtgcagacccgagactgctaccta
caggagtgtgacaagcgattcaagcaggacggaagctggagccattggtcaccctggtct
tcttgctctgtatcatgcggtgctggcgtcataacccgcatccgcctctgcaactccccc
acccctcagcttggaggcaaggtctgcgagggagagggccggcaaaccgagaagtgtcag
gaatctccgtgccccatcaatggtaactggggaccctggtcaccgtgggatgcctgcact
ctcacctgtggatccggtgtccaaactcgtaaacgcatgtgcaacgaccccgcagcgcaa
tacggtggcaaagagtgtgtcggttatgccaaggacacccagacgtgcaacaagaaatca
tgtccagttgacgggtgcctgtctaacccctgctttgctggatccaagtgcatcagtttc
cccgatggttcctggaagtgtggaaagtgtccaattggatacaccggcaatggcatcaag
tgtaaagatgtagatgagtgcaaggaggtcccagatgcttgctttgagttcaacggtgtg
caccgctgtgagaacacagatcccggctacaactgcctgccctgccctcctcgctacgca
ggaccccaaccgttcggcagaggtgtggcgcaggccgcagctaagaaacaggtgtgcacg
gctcgtaacccctgcctcgatggaagccacgactgcaacaagaacgctcgctgcaactac
ctcgggcactttgccgatcccatgtaccgctgtgagtgcaagccgggctacgctggcaac
ggccacatctgtggagaagatacagacctggatgggtggcccaatgctgaccttgtgtgt
gtggagaacgccacctatcactgcaaaaaggataactgtcccaacctcccgaactctggg
caggaagattacgataaggatggcatcggagatgcttgcgataatgacgatgacaatgat
ggcattcctgatgacagggacaactgcccgttcgtgtacaaccccaggcagtatgactat
gaccgcgatgacgtgggtgaccgctgtgataactgcccctataatagtaaccctgaccaa
actgacacagacaacaatggagagggagacgcctgctctgtggatattgatggggatgga
atactgaatgaaaaggacaactgccctcttgtgtacaatgttgaccagaaagacacagat
ctggacggagtgggagacatgtgcgataactgtccactggaacataatcctgatcaggtg
gattcagatgatgaccgcgtgggagacaagtgtgatagcaaccaggacattgatgaagat
ggacaccagaacaacctggacaactgtccatacatccccaatgccaaccaggctgaccat
gacaaggacggcaagggagacgcctgtgaccacgatgacgacaatgacggcatccctgac
gacaaggacaactgcagactggccttcaaccctgatcagctggatgctgacggtgatggc
cgtggagatgcctgcaaagacgactttgatcaagacaacgttcctgacatctacgacgtg
tgcccagaaaactttgacatcagtgagacagacttccgcaagttccagatggttcctctt
gaccctaaaggcacctcgcagattgatcctaactgggtcgtccgccatcagggcaaagag
ctggtgcagaccgtcaactgcgaccctggcatcgctgttggttaccatgagttcaattca
gtggacttcagcgggaccttcttcatcaacacagagcgggatgatgattatgccggcttt
gttttcggttaccagtccagttccaggttctacgtggtgatgtggaagcagataacgcag
acgtactggtcgaacaaacccaccaaggcccagggctactcaggcctgtcgattaaaatg
gtcaactccaccactggcccaggggagcacctcaggaacgccctgtggcacacaggaaat
accccaggacaggtccgcactctctggcatgaccccaagaacgttggctggaaagacttc
accgcctacagatggcatctgatccacagaccgagaacaggactcattagagttgtgatg
tacgagggcaagaaaatcatggcagattctggtaatatctatgacaagacatatgccggc
ggaaggctaggtctttttgtcttctcacaagagatggtatatttctcggacctcaagtat
gaatgcagagatgtttaa
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