Pungitius pungitius (ninespine stickleback): 119196355
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Entry
119196355 CDS
T07626
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119196355 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119196355 (tdg.2)
Enzymes [BR:
ppug01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
119196355 (tdg.2)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
119196355 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
AT_hook
Motif
Other DBs
NCBI-GeneID:
119196355
NCBI-ProteinID:
XP_037307857
LinkDB
All DBs
Position
6:20248048..20252708
Genome browser
AA seq
412 aa
AA seq
DB search
MEENQYTSLTVPTDYFQQWYQSSQQHPEAQHVMSYHNMGHYAEGPRDDLVMAELSVHRDP
PVYQEPFYQNYNPPAQNHYQDLSYQPHAREQLQHPAHLHHPQHQQTIQQLEPSVQHQPQP
AAPSQAATPVKKKRGRPPKQPVEDGKTQEEENEVEAAKKAKRALNRFNGMSVAEVMAKTL
PDVIAYNLDILIIGINPGLLSAFKGRHYPNPGNHFWKCLFLSGLTDEQLNFMHDQSLPEK
YSIGFTNMVERTTPGSKDLSSKEIREGGRQLLDKLQKYKPLIAAFNGKGIYEIFCKETFG
VKAKNLDFGLQPYKIPETETVCYLMPSSSPRCAQFPRAQDKVHFYIKLKELRDQMKGLMP
KIEVEETQYSFDLHLAKEDAKRMAIKEEQVDPEYESCGELRGDARQSSNSTY
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaccagtatacatcactgacggtacccacggattattttcagcagtggtac
cagtccagccagcagcaccccgaggcgcagcatgtgatgtcttatcacaacatgggccac
tacgcagaagggcccagagatgacctcgtaatggccgagctgtctgtccaccgcgatccg
cccgtctaccaggaacctttttaccagaactataacccgccggcccaaaatcactaccag
gacctgagctaccagccgcacgccagggagcagctgcagcatcccgcgcacctgcaccac
cctcagcaccaacaaaccatacagcagctggagccgagtgttcagcaccaacctcagccg
gctgccccctcccaagctgcgacgccggtgaagaagaagagaggccggccgccgaagcaa
ccggtcgaggacggcaagacgcaggaggaggagaacgaggtcgaggccgccaagaaagcc
aagagggccctcaaccgcttcaacggcatgtcggtggctgaggtcatggccaaaacgctc
cctgacgtcatcgcctacaatctcgacattcttataattggaattaacccaggactattg
tcagccttcaaaggacgccattatccaaacccgggaaaccatttctggaaatgtctgttt
ctctccggtctaaccgacgagcagctcaacttcatgcacgaccaaagcctgccggagaaa
tacagcattggcttcaccaacatggtggagaggaccacgcctggcagcaaggacctctcc
agtaaggagattcgagaaggaggtcggcagttacttgacaagctgcagaagtacaaaccg
ttaattgcagcttttaatgggaaaggtatctacgagatcttctgcaaagaaaccttcggg
gtgaaggcaaagaatctcgactttgggctgcagccgtacaaaatcccagaaactgagacg
gtctgctacctgatgccgtcctccagcccccgctgcgcccagttcccccgcgcgcaggac
aaggtccacttctacatcaagctgaaggagctgcgggaccagatgaaaggcctgatgccc
aagatcgaggtggaggagacgcagtactcgttcgacctgcacttagcgaaagaggacgcc
aagaggatggcgatcaaagaggagcaggtggatccagagtacgaaagctgtggcgagctg
cgtggggacgcgaggcaaagcagcaactccacctactga
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