Pungitius pungitius (ninespine stickleback): 119196410
Help
Entry
119196410 CDS
T07626
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119196410 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119196410 (tdg.1)
Enzymes [BR:
ppug01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
119196410 (tdg.1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
119196410 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
119196410
NCBI-ProteinID:
XP_037307972
LinkDB
All DBs
Position
6:20253937..20259054
Genome browser
AA seq
488 aa
AA seq
DB search
MEDKLNGFPVVSPEYLQQWVQSAQQFQALQAQYSGFNHPSHYPEGQTGEAAMAHMAYPEP
MMDQQEPENLAKPPPKKRGRAAQPKEPKEPKAPKPPKVPKAPKPPKVPKAPKPPKPPKVP
KAPKPPKDPNAPKAKPGRKPKKGADAQGDGTQEKIDTEKKVKRKIDRFKGMSEEEVMTKT
LPDLLEYNLDYVIIGINPGLMAAFIGRWFPGPGNHFWKCLFLSGFTEELLNHMHDTTLPG
KYKMGFTNMVARATPGSKDLSSKELREGGKILVEKLKKFKPLIAVFNGKCIYEMFCREMF
GKKPKKLDFGLQPHKIPDCEVALYLMPSSSARCAQFPRAQDKVHFYIKLRELRDQLKGVQ
KPTEVEEIDYSFDLSLAKEDAKRMAIKEEQYDPGYEDAFGGVYAERGADGPAGAEGSGAG
AAAGGEGSAAPGQTNGHCTFSSAENTEGAQEATTSQIPEGQLPDGQWMTQSFADQIPDIS
GAPKEPSA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagctgaatggattccctgttgtctccccggagtatcttcagcagtgggtt
cagtctgcacaacagtttcaggctctccaggcccaatattccggcttcaaccatccgtct
cactacccagaggggcagacgggagaggcagccatggcacacatggcttatccagaaccc
atgatggatcagcaggaaccggagaacctggctaaacccccgcccaaaaaaagaggcaga
gcagctcaacccaaggaacccaaggaacccaaagcaccaaaacctccaaaagtccccaag
gcaccaaaaccaccaaaagtccccaaggcaccaaaaccaccaaaacctccgaaagtcccc
aaggcaccgaagccgccaaaggacccaaatgccccgaaagccaaaccgggtcggaagccc
aagaagggcgccgacgctcagggagacggcacgcaagagaagatcgacaccgagaagaag
gtgaagaggaaaatcgaccgctttaagggaatgtcggaagaggaggtcatgacgaaaact
ctgcccgacctgctggaatacaacctggactacgtcattattggtatcaacccgggactg
atggcagctttcattggacggtggtttccaggtcctggaaatcatttctggaagtgcctc
tttctgtccggcttcaccgaggagctgctgaaccacatgcacgacaccacgctgcctggc
aagtacaaaatgggcttcaccaacatggtggccagagccacgccggggagcaaagacctc
tcaagtaaagagttgcgcgagggaggcaaaatcctcgtagagaagctgaagaagttcaag
cctcttattgctgtttttaatggaaaatgcatttatgaaatgttctgcagagagatgttt
ggtaagaaaccaaagaaacttgattttggtttgcagccgcacaagatccccgactgtgag
gtggctctgtacttgatgccttcatccagcgctcgctgtgctcagttccctcgagctcag
gacaaagtccacttctacatcaaactgagggagctccgagaccagctgaagggcgtccag
aaaccgactgaggtggaggagatcgattactccttcgacctgtcgctggctaaagaggac
gccaagcggatggccataaaggaggagcagtacgatcccggctacgaagacgccttcggc
ggagtctacgcggagagaggagccgacgggcccgcgggggcagaagggtccggggcgggg
gccgcggcggggggcgaagggtccgcggcccccggccagaccaacggccactgcacgttc
tcgagtgcagaaaacacagaaggagctcaggaggcgaccacgtcacagatcccagagggc
cagctgccggacggacagtggatgactcagtcctttgcggatcagatcccggacatcagc
ggggcaccgaaggagcccagcgcgtag
DBGET
integrated database retrieval system
