Pungitius pungitius (ninespine stickleback): 119198598
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Entry
119198598 CDS
T07626
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119198598 (smchd1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119198598 (smchd1)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
119198598 (smchd1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119198598 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF6565
Motif
Other DBs
NCBI-GeneID:
119198598
NCBI-ProteinID:
XP_037311851
LinkDB
All DBs
Position
19:complement(3908752..3923934)
Genome browser
AA seq
1957 aa
AA seq
DB search
MEGQRKGRCVTVYDCRYENKARPRREVLETSGLNFNAFLLLLQRKFSIHSHETFVLATTD
RIVLDFDKFEELQDGSTLHLLQQEGQALTGATEEHINFTPHYDTLIKGGLHEYYASESQN
PLAYALAELIDNSLSATARNPGVRTVEIRMVFDGTQGKPTVIVLDNGCGMTSKQLKNWAV
YRLSKFSREGVTVGGKLEGYTRPEAVPRSLNSDISYFGVGGKQAVFFIGNSARMITKPAG
SPDVHELVLSKEEFESRERDKRDIYSTVIKNRKPGDSSHVKEDERCLRALIAEESGKESF
TAVVIGGVLQHHIAFLKRDFRVLTRQLANLYHYYIHGVHGKDPKSCSATADHLPKIDIQI
TLREKPPKCPRALNLREVDDDRQTLFLGAAVDAFEFNCATEDGGTVEGVIRYHPFLYDRE
TYPQDPDAPPDFHEDDNDCDKESAAGQQAGARKPIFDCFWNGRLIPYTKLHEFDWCAANK
GPKELAECYGRISGALFSDDRFNVSTNKLTFMNLELKLKQKSTIFTRVVNSQKQRGKILK
EFTEWLKNCHEKFDKQVKFMGFKGTITRTDLTTKRMQHPWATFSSIEWDGQEYATGQLVK
SRKTVPIVYGRVGRFLLHGEHKGNVFATGGEVEVVLEPKEFYEAVKIIAISRIDKTATEE
AIQSNIENDSAKFPELLQVSWPKGNPWPQNGRRPAGTDFGPLQVKILNKMGEALSQMPAV
GLGKGKKMAVEYKIVHHVSKEDKTILCQVAQHSPNWGFAFKKMDGLTNLGKYTFSLNTKI
NETNACVFGGRKLPSFELMFTIVAGEAQSFAVGAVSATLNVGVPFSIPLFIKDAHDNAAL
TPADLRPVLKCSGLELSYETVNNVGTTSTIRGVKAKGKVQNYQQSKTYELKVTLPGLKTD
TQTVQICLLPGNPHSLHVTPEDEPITLENGNAVTFSAQVHDEAGNVTAHAKQIVCCQVTG
FPPVTADCSTSGAGQLVTKPINLQIINGEPQNLTVQFEMPKCKWKVPLVLRKLKVVPSTK
VSHMELCAGDNLVLKNHEKIEWLAGGSLENLFYKLFDEAGRPVPPTAQIARGIKVNWTRD
VNDEDLARGKLPVLTVPTQVQPALFYQVSYKDQSVSVSFNIVPRPDEPTQLKATLLQNTV
KLGEILPGNIRLELLDQYDNTTKTFNSTCKNHITVEADGLDKSAIAFVWQESSSSVVVTG
VQFRPGPLGPRELCFAYRGFEGRVLVKVTAGVPAQLKLVSGPETPLQVLNDHGIPTPFVV
QLCDEWGNPTADQRVVVRVNSSPPTLKVTTAVISKPVNAEGRASFPVSAVSGTKGCYELV
FDGSLNQKPIPGFTVNLTVIPDPNKPVSLSVEYNTAAVFPAGGRFPVFSVTVVSDEGCPM
TTFNPAAASMLLWKEAPPGNPHPCAEVTELRCSKPTRNEKNDRFHFRDKEIPEQVGKYAI
KFSLQIGDGKLLSSNQISIDVVANQPVRLAPDSPPPTPFVSDSNVIAHRTLVENMTLRIM
DAHGNPAGRDLGGTVVVSIENPGGGESVPLFEGQRNSLTTSLVEGKAHFTRLVIMQNSPG
ENGKDYVLLFRPEGSAVPTTLDPFQLPFRFNKDAENQRTMFELTKKKNMLTSRIRAYKET
FNTSKELLSLMTTKHLDESQIETVIRNELINRNVEIGDTIPEIDRILNAKRSEVDQILRT
PRRVCSIPDQFRGQQDVLGAVGHLAFVQDDDAARVISWQLRGDMDCVLTKTLASAQRIYS
DTRGQQQVMSLETMFVREDNRPLPHIRNGRSLFDPPGNPVYALDLLLFPSDPQSCRIAFK
SILGNTILMDDLNSANSYRKAVVQHKMPCPTILTRQGDRISGNGKFGGAQNRAPPMHALK
VFGAPLHPRHAALKEHIDLLSRHRAALEKREKAAEDREVHLKSMKSPDMLQKRKKMEDMK
TQLEETERLLLSTPVRPGKRRLEGAHELSATVGKRFK
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggaggggcagaggaagggcaggtgcgtcaccgtgtacgactgtcgctacgaaaataaa
gcgcgacccaggagagaagtgctggagacgagcggtctgaacttcaacgccttcctcctg
cttctgcaacggaagttctcaatccactcacatgaaacatttgtgctggccacaacggac
cgaatagtcctggattttgacaaatttgaggagctccaggacggcagcaccctccacctg
ctgcaacaggagggccaggccctgacgggggcgacggaggagcacatcaacttcacgcct
cactacgacacgctgatcaagggcggcctgcacgagtactacgccagcgagagccagaac
ccgctggcgtacgcactggccgagctgatcgacaactccctgtcggccacagccagaaac
ccgggcgtgaggacagtggagatacggatggtgttcgatggaactcaagggaagcccacg
gtgattgtcttggacaatggttgcgggatgacctctaaacagctcaagaactgggcggtg
taccggctctccaagttctccagggaaggggtcacggtcggaggtaagctcgaggggtac
acgcgacccgaagcagtccctcgtagtctcaacagtgatatatcctactttggagttgga
ggaaaacaggctgttttcttcatcggaaactccgccaggatgatcaccaaacccgccggc
tccccagatgttcacgagctggttctgtcaaaagaggaattcgagagcagagagagggac
aaacgggatatttactccacggtcattaagaacaggaagccgggggactcctctcacgtg
aaagaggacgagcgctgcctccgtgccctgatcgccgaggagtcgggcaaagagagcttc
accgccgtggtgatcggcggagtcctgcagcaccacatcgccttcctcaagcgagacttc
cgcgtgttgaccagacagctggccaacctgtatcactactacatccatggagtccacgga
aaggatcccaaaagctgctcggcgacagcggatcatcttcctaaaattgacattcagatc
accttgcgcgagaagccccccaagtgtccgcgcgcgctgaacctgcgcgaagtggacgac
gaccggcagacgctgttcctgggcgccgccgtggacgcgtttgagttcaactgcgccacc
gaggacggcggcacggtggagggagtcatccggtaccatccgttcctctacgacagggag
acctacccgcaagaccccgacgctccgccggattttcacgaggacgataatgattgcgat
aaggagtccgctgccgggcaacaggcaggcgccaggaagcccatctttgactgtttctgg
aatggacggcttattccttacaccaaattgcacgagtttgactggtgtgcggcgaataaa
ggaccaaaggagctcgccgagtgttacggtcgcatttccggagcgcttttcagtgacgac
cggttcaacgtcagcacgaacaagctcacctttatgaacctggagctgaaactgaagcag
aagagcaccatcttcacacgcgttgttaactcacagaaacaaagaggtaaaatccttaag
gagtttacggaatggttgaaaaactgccacgagaagttcgacaagcaggtgaagttcatg
ggcttcaaggggaccataacgcgcacggatttgaccacgaagaggatgcagcacccctgg
gcgacgttctcctccatcgaatgggacggacaagaatacgcaaccggccagctggtgaag
tctcggaagacggtgcccattgtgtacggccgcgtgggccgctttctgctgcacggggaa
cacaagggcaacgtctttgccacggggggagaggtggaagtggttctggaacccaaagag
ttttacgaggccgtgaagatcatcgccatttccaggatcgacaagaccgccacggaggaa
gccatccagagcaacattgagaacgactccgccaagtttccggagctcctgcaagtgtcc
tggccgaaggggaacccctggccgcagaatggccgtcgtccagcggggactgattttggg
ccactacaagtcaaaattctaaacaagatgggagaggcattgtcccagatgccagcagtg
ggcctggggaaagggaagaaaatggccgttgagtacaagatcgtccaccacgtttctaaa
gaagataaaacgatcctctgccaggtcgcacagcattccccaaattggggttttgcgttc
aagaaaatggatggtctgaccaacctggggaaatacaccttctccctgaacacgaagata
aacgaaaccaacgcctgcgtcttcggaggcaggaaactgccgagcttcgagctcatgttc
accatcgtcgccggcgaggcgcagagctttgctgttggcgccgtgagcgccacgctcaac
gtgggagtgcccttcagcattccgctgttcataaaagatgctcatgacaacgcggcgttg
acgcctgctgacctcagacctgtactcaaatgcagtggcctggagctgagttacgagaca
gtgaacaacgtcgggaccacgtccaccatcagaggtgtcaaagcaaaaggaaaagtgcag
aattaccagcaatcaaagacgtacgagctgaaagtcacgctgccgggcctgaagacggac
acgcagacggtccagatctgtcttcttcctggtaatccacattccctccacgtgacgcca
gaagacgaaccgatcacgttggagaacggaaacgccgtcacgtttagcgcccaagtccac
gacgaggccggaaacgtcaccgctcacgccaagcagatcgtctgctgccaggtgacgggg
tttccaccggtgacggctgactgcagcacctcgggagctgggcagcttgtgacgaagccc
atcaacctgcagataatcaacggggaaccgcagaacctcaccgttcagtttgagatgccc
aagtgtaagtggaaggtcccgttggttctgaggaagctgaaggtggtgcccagcacaaag
gtctcccacatggagctctgcgccggtgacaatttggtgctgaaaaaccacgagaagatc
gagtggctggccgggggctcgctggagaacctcttctacaagctgtttgacgaggcgggt
cgaccggtgccccccaccgcgcagatcgcccgcggcatcaaggtcaactggacgcgagac
gtcaacgacgaagatctggcccgggggaagctgcccgtcttaacggtgccgacgcaggtg
cagccggcgctcttctaccaggtgtcctacaaggaccagagtgtgtccgtctccttcaac
atagtacctcgtccggatgaaccaactcaactcaaagcaactttgctccaaaatacagtg
aagctgggcgaaatcctccccggaaacatccgcttggagcttctggaccagtatgataat
acaaccaagacatttaactccacctgcaagaaccacattaccgtggaagcggacggtctg
gacaaatcggccatcgcctttgtttggcaggagagcagcagttctgttgtggtgacgggg
gtgcagttccgcccggggcctctcggccccagagagttgtgcttcgcctaccggggcttc
gagggccgcgtcctggtgaaagtgacggccggagtccccgcgcagctcaaactcgtcagc
gggccggagacgcctctgcaggtgctgaacgaccacggcatcccgacgccgtttgtcgtc
cagctgtgtgacgagtgggggaacccgaccgccgaccagagggtcgtggtacgagtgaac
tcctcccccccgacgctgaaggtgacgacggctgtcatttccaaaccggtgaacgcggag
gggagggcctctttccccgtgagcgccgtcagcggaacaaaggggtgctatgagcttgtg
ttcgacggttccctgaaccagaaacccatccctggtttcaccgtgaatctcaccgtcata
cctgatcccaacaaacccgtcagcctgtcggtggagtacaacaccgccgccgtgtttccc
gccggaggccgcttccctgtcttctcggtgaccgtggtgtccgatgaaggctgcccgatg
acgacttttaaccccgctgctgcgtccatgttgctgtggaaggaagcgccgccaggaaac
ccgcatccatgcgcggaggtcactgagctgaggtgtagtaaacccacgaggaacgaaaag
aacgaccgtttccacttcagagacaaagagatcccagaacaagttggaaagtacgccatc
aagttttctcttcaaataggcgatggaaaactcctgtccagtaatcagatctccatagac
gtggtggccaatcagcccgtcagactggcccccgactctccgccccccaccccgtttgtt
tccgacagcaatgtcattgcccaccgaaccctggtggagaatatgaccctgaggataatg
gacgcgcacggaaacccggcggggcgggacctgggcgggacggtggtcgtctccatagag
aaccccggcggcggcgagtccgtcccgctgttcgagggccagaggaacagcttgacgacg
agcctggtggagggaaaggcccatttcaccaggctggtcatcatgcagaacagccccggg
gagaacggcaaggactacgtcctcctcttcagacctgaagggtcggcggttcccacgacc
cttgacccctttcagctccccttccgcttcaacaaagatgctgagaaccaacggacaatg
tttgaactgaccaagaagaaaaatatgctgacttctcgtattagagcgtacaaagaaacc
ttcaacacatccaaggaactccttagtttgatgaccacaaaacatctggatgaaagtcaa
atagagactgtcattcgaaacgagctgatcaatcggaatgtggaaattggcgacactatc
ccagaaatcgacagaatcctgaacgcaaagagatctgaagtggaccagatcctcaggact
cccaggagagtttgctccattcccgaccaattcagagggcagcaggatgttttgggagcg
gtcggccacttggccttcgtgcaggacgacgacgccgccagggtcatctcctggcaactc
aggggcgacatggactgtgtcctcaccaagacgctggcgtccgcgcagaggatctacagc
gacaccagaggccagcagcaggtcatgtccctggagacgatgtttgtgcgagaggacaac
agaccattgccacacataagaaacggccgctcgctcttcgacccccccgggaaccccgtc
tacgccctggacctcctgctcttcccaagcgacccgcagagctgccgcatcgcttttaaa
agcatcctgggaaacaccatcctgatggatgacctgaactctgcaaacagctaccggaag
gcggtggtgcagcataagatgccgtgtcccaccatcctgaccaggcagggcgaccggatc
agtggcaacggcaagttcggaggcgcccagaaccgagcccctccgatgcacgcgctgaaa
gtgtttggagcccccctccatccgcgtcacgcagctttaaaggaacacatagacctgctg
agcaggcaccgcgccgctctggagaagagggaaaaggcggcggaggaccgggaagttcac
ctgaagtcgatgaagtcgcctgatatgctgcaaaagcgtaagaaaatggaggatatgaaa
acgcagctggaggagacggagagactgctcttgtcgaccccagtgagaccagggaaacgg
cgccttgagggggcccacgagctgtccgctaccgttggaaagagattcaagtag
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