Pungitius pungitius (ninespine stickleback): 119212893
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Entry
119212893 CDS
T07626
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X2
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppug04040
]
119212893 (scn4aa)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119212893 (scn4aa)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
119212893
NCBI-ProteinID:
XP_037319648
LinkDB
All DBs
Position
21:14358799..14377734
Genome browser
AA seq
1868 aa
AA seq
DB search
MAPLLPRRGTDAFRRFTRESLAEIERLKAESADAAGVAGPEGEEPAAPNADLEAGKGLPM
IYGEPPSELLNTPLEDLDTFYQAQHTFIVITRGNTIFRFNAEPACHILSPFSLVRRGAIK
ILIHSLFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEATVKVLSRGFCFGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNMSALRTFRVLRALKTITVIPGLKTIVAALIQS
VKKMVDVMILTVFALAVFALIGLQLFMGNLRQKCVRWPLQANGTASEFPNSTATFNDTAY
SNSTFDFSQYIENIENHYYVEGSLDALLCGNSSDAGKCPEGYTCMKAGRNPNYGYTSFDS
FGWAFLALFRLMTQDYWENLFQLVLRAAGKTYMLFFVVIIFLGSFYLINLILAVVAMAYE
EQNQATQREAIEKEEEFQRLLEQLKDQEEAPALGSRATLTSKESLSRHTISEFPEDEQSL
GRDEVIKDCNGRIVPRLLVRVPTMVQRAEDYEPRERSLGSGHSMHRLEEPGLTRRTASAL
TVLTVAALEELEEAQRPCPPAWYKFADAFLKWDCHPQWVLCKKWVLFVVMDPFVDLGITI
CIVLNTLFMAMEHYPMTEEFDHMLSVGNLVFTGIFTAEMFFKLIAMDPYYYFQVGWNIFD
SIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLV
LAIIVFIFAVVGMQLFGKNYKECVCKISSECELPRWHMNDFFHSFLIVFRILCGEWIETM
WDCMEVAGTGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSTGDEDGEMNNLQIAI
GRITRGADWFKASAVRTVLRALGKKRGEPGEGPAGGEDPKGEAFEMNHMDEGRSFQMSDD
GVDDCLVDGRPFFGFTVDEEVSINVPIAHVESDFENLGGEDDDSADDSEISDEKLKYQGN
LKGESGMRRSVKLMGALNDGDSSVCSTVDYQPPEPEPEEEEEEEPDPVEPEACFTDECVR
RWPCLSVDVTQGKGKEWWNLRRACFTIVEHDWFETFIVFMILLSSGALAFEDVYIEKRQT
IKIILEFADKVFTYVFIIEMLLKWVAYGFKTYFTNAWCWLDFFIVDISLISLAANWMGYS
DLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVN
LFAGKFYRCVNTTTGELFPMTQVNNRSDCAAVREATRDARWVNVKVNYDNVGQGYLSLLQ
VSTFKGWMDIMYAAVDSREVEEQPSYEINLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFN
QQKKKFGDKDIFLTDEQKKYYEAMKKLGSKKPQKPISRPTNLIQGLVFDFISQQVFDIFI
MVLICLNMVTMMVETDNQSAEKEDFLFKVNVAFIVVFTGECTLKLFALRHYFFTNGWNVF
DFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSL
PALFNIGLLLFLIMFIFSIFGMSNFAYVKKEAGIDDVFNFETFGGSIICLFEITTSAGWD
GLLLPMLNKEFPDCDPDFENPGTGVKGNCGNPLMSMTFFCGYIIVSFLVVVNMYIAIILE
NFNVAQEESGDALCEDDFEMFNETWEKFDPGATQFIEYGRLSDFCDALQPPLRVAKPNRL
RLIGMDLPLVIGDRIHCLDVLLAVTQMVLGDTVEMAAMRESIQAKFVLSNPTSDSFAPIT
TTARHKEEQAAAAVVQRAFRSHLLRRCVRHAAAMRGRGGLPEREGLLARRMAVLYGSGAD
LAEEGQRSGDSGTPASRPARDAGGRGGPDDPGANAAGAPSQATGDVSLGSGPDAHFLTLH
AYLRETIV
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccctgctccctcgccgaggcaccgacgcgttccgccgcttcacccgtgaatcg
ctggcggagatcgagaggctcaaggcggagagcgccgacgccgcaggagtagcggggccc
gagggggaggagccggcggcccccaacgccgatctggaagccggcaagggcctgcccatg
atctacggagagcccccatcggagctgctcaacacgcctctggaggacctggacaccttc
taccaagcgcagcacacattcattgtgatcactagaggaaacacaatcttcaggttcaac
gctgagccggcctgccacattctgagcccctttagtttggtcagaagaggagccatcaaa
attctcatacattcattatttagcatgttcatcatgattacgattctatcgaattgtgtt
ttcatgacgatgagcaacccaccagcatggagtaaaaccgtagagtatgtttttactggc
atctacaccttcgaggcaacagtcaaagtgttgtcccgagggttctgtttcgggtcgttt
acattccttcgagatccgtggaattggctggatttcatggtgatcagcatggcatacgtc
actgagtttgttgacctaggcaacatgtccgccctcaggacatttcgtgtacttcgagcc
cttaaaacaattactgtgattcctggtttgaaaaccatcgtggccgctctgatccagtcg
gtgaagaaaatggtggacgtgatgattctgaccgtcttcgcgctggccgtcttcgccctc
atcggcctccagctcttcatgggaaacctgcggcagaaatgcgtgcgatggcccctccag
gcgaacggaaccgcctcggagttccccaactccaccgccacgtttaacgacaccgcatat
tccaacagcaccttcgatttcagccagtatattgaaaacatcgagaatcactattatgtg
gaaggcagcctcgacgctctcctttgtgggaacagctctgacgccggaaagtgcccggag
ggatacacgtgcatgaaggccgggaggaaccccaactatggctacaccagttttgactcc
ttcggctgggccttcctggccctcttcaggctcatgacccaggactactgggagaacctc
ttccagctggtcctgcgggcggccggtaagacgtacatgctgttcttcgtggttatcatc
tttctgggctccttctacctcatcaatctcatcctggccgtggtggccatggcttacgaa
gaacagaaccaggcaactcagcgagaggccatagagaaagaggaagagttccagcggcta
ctggagcagctcaaggaccaggaagaggctccagctcttgggagccgggccactctaacc
agtaaggaatcgctgagtcgtcacaccatttctgagttccccgaggacgaacagagcctc
ggacgcgatgaagtgatcaaggattgcaacgggagaattgttcctcgtctgttggtccga
gtgcccaccatggtccagcgtgctgaagattacgaaccgagagagaggtctttgggctcc
gggcacagcatgcatcgtctggaggaaccgggcctcactcggaggaccgccagcgctctg
acggtgctcaccgtggcggctttggaagagttggaggaggcccagaggccgtgcccaccc
gcctggtacaagtttgccgacgcgttcctgaagtgggactgccacccgcaatgggtgctc
tgcaaaaagtgggtgctctttgtggtgatggaccccttcgttgacttgggcatcaccatc
tgcatcgtgctcaacaccctcttcatggccatggagcattaccccatgaccgaggagttt
gaccacatgctctccgtggggaatctggtcttcactgggatattcacagcggagatgttc
ttcaagctgatcgccatggatccctactactactttcaagtcggctggaacattttcgac
agcatcatcgttaccctcagtctggtggagctggggctggcgaatgtccagggcctgtcc
gtcctcaggtccttccgtctgctgcgcgtcttcaaactagcaaagtcctggcccaccctc
aacatgctgatcaagattatcggcaactcggtgggcgctttggggaacctgactctggtg
ctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctctttggcaagaactac
aaggaatgcgtgtgcaagatctcctctgagtgcgagctgccgcgctggcacatgaacgac
ttcttccactcgttcctcatcgttttccgcatcctgtgcggggagtggatcgagaccatg
tgggactgcatggaggtggccgggactgggatgtgcttggttgtcttcatgatggtcatg
gtcattggaaatctagtggtgctgaacctttttctggccctgctgctcagctcgttcagc
ggcgacaacctctccaccggggacgaagacggggagatgaacaacctccagatcgccatc
ggcaggatcacgcgcggcgccgactggttcaaggcgtccgccgtgcggaccgtcctgcgc
gccctgggcaaaaagcgcggggagcccggcgagggcccggcggggggcgaggaccccaaa
ggggaggcgttcgagatgaaccacatggacgaaggtcggagtttccaaatgtccgacgac
ggggtagatgattgtttagtggacggccggccgttcttcgggtttactgtggacgaagag
gtcagcatcaacgtgccaatcgctcatgtcgagtcagacttcgaaaacctgggcggggag
gacgacgacagtgctgatgactcagagatatccgatgagaaactgaagtatcagggaaac
ttaaaaggtgaaagcggtatgcggcgaagtgtcaaactgatgggtgctttgaatgatggg
gattcttcagtgtgtagcacagtggactaccagccacccgagcccgaacccgaggaagag
gaggaagaagagccagatcccgtggagccggaggcctgcttcacagacgagtgtgtgagg
cgctggccgtgcctgtcggtggacgtcacccagggcaaaggcaaggagtggtggaacctc
cgtagggcttgcttcaccattgtggagcacgactggtttgagaccttcatcgtcttcatg
atcctcctcagcagcggggctctggcctttgaagatgtatacatagaaaaacgccaaacc
atcaaaataatcttggagttcgccgacaaagtgttcacctatgtcttcatcatcgagatg
ctccttaagtgggtggcatacggcttcaagacctacttcaccaacgcttggtgctggtta
gactttttcattgtggatatttccctgattagtttggctgccaactggatgggatactcc
gacctggggccgatcaagtccctcaggactctccgggcactgaggccccttcgggcactg
tccagatttgaagggatgagggtggtggtgaacgctctggtgggagcgattccctccatc
ttcaacgtgctgctggtgtgtctcatcttctggctcatcttcagcatcatgggcgtcaac
ctgttcgccgggaagttctaccgctgcgtcaacaccaccacgggggagctgttccccatg
acgcaggtcaacaacaggagcgactgcgcggccgtgcgggaggccacgcgggacgcccgc
tgggtcaacgtcaaggtcaactatgacaacgtgggacaaggctacctgtccctgctgcaa
gtgtcgacctttaaaggctggatggacatcatgtatgccgccgtcgactcaagagaggta
gaggagcagccttcatatgagatcaacctctacatgtacatttactttgtcatcttcatc
atcttcggctccttcttcacactcaacctcttcatcggtgtcattattgacaactttaac
cagcaaaagaagaagtttggagacaaagacatcttcttgactgatgaacaaaaaaagtac
tacgaagccatgaagaaacttggatccaagaagccgcagaagccgatctcgcgtccaacg
aacttgatccagggactggtgttcgatttcatcagccagcaggtctttgacatcttcatc
atggtgctcatttgcctcaacatggtgaccatgatggtggagacggacaaccagagcgca
gagaaggaggatttcctcttcaaagtgaacgtggcgttcatcgtggtgttcaccggcgag
tgcaccctgaagctcttcgccctgcgacactacttcttcaccaacgggtggaacgttttt
gacttcgtcgtggtcatcctgtccatagccggtacgatgctctcggacataatcgagaag
tactttgtgtcgccaactctgttcagggtgatccgactggccagaataggcaggatcctg
cgtctcatcaaaggagcgaagggcatccggacgcttctcttcgctctgatgatgtcgctc
cctgccctcttcaacatcggcctcctgctcttcctcatcatgttcatcttctccatattc
ggcatgtcgaacttcgcctacgtcaaaaaggaggccggcatcgacgacgtcttcaacttc
gagacgttcggcggcagcatcatctgcctgttcgagatcaccacctcggccggctgggac
gggcttctgctgccgatgctgaacaaggagttcccggactgcgacccggacttcgagaac
ccgggcacgggagtcaagggcaactgcggcaacccgctcatgagcatgacgttcttctgc
ggctacatcatcgtctccttcctggtggtggtcaacatgtacatcgccatcatcctggag
aacttcaacgtggcgcaggaggagagcggcgacgcgctctgcgaggacgacttcgagatg
ttcaacgagacgtgggagaagttcgacccgggcgccacccagttcatcgagtacgggcgg
ctctcggatttctgcgacgccctgcagccgccgctgagggtggcgaagcccaaccgcctg
cgcctgatcgggatggatctgccgctggtcatcggcgaccggatccactgcctggacgtc
ctgctggccgtcacgcagatggtcttgggggacacggtggagatggcggcgatgcgcgag
agcattcaggccaagttcgtcctgagcaaccccacctcggactcgttcgcgccgatcacc
accacggcgcgccacaaagaagagcaggcggccgccgccgtcgtccagagggccttccgc
agccacctgctgaggcgctgcgtgcgccacgccgccgccatgcggggccgcggcggcctt
ccggaaagggagggcttgctggcgcggaggatggccgtgctctacgggagcggcgccgac
ctcgccgaggaggggcagcgatccggcgattcgggaactccggcgagccgaccggcccgc
gacgccggaggccggggcgggccggacgaccccggggcgaatgcggcgggcgcaccttcg
caggcgactggggacgtgtcactaggttctggccccgacgctcacttcctcaccttacat
gcttatctgagggagaccatcgtgtaa
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