Pungitius pungitius (ninespine stickleback): 119214020
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Entry
119214020 CDS
T07626
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
119214020 (slit1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119214020 (slit1a)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Axon guidance molecules
119214020 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
LRR_1
hEGF
EGF_TEN
LRRCT
LRR_14
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
EGF_3
LRR_NXF1-5
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
119214020
NCBI-ProteinID:
XP_037321283
LinkDB
All DBs
Position
13:complement(8897552..8972520)
Genome browser
AA seq
1549 aa
AA seq
DB search
MSVRGGRFGAVPGRLAGPPLWMWVAMLSALLVGNGSACPALCTCSGTTVDCHGLGLRTMP
RNIPRNTERLELNGNNLTRITKSDFAGLKYIRVLQLMENQITVIERGAFDDMKELERLRL
NRNQLQQLPELLFQKNPALSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCIEDGA
FRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTI
GLFTQCTAPLELRGLNVAEVQKHEFSCSGHQESGSPQPCSIGVGSCPAMCTCSNNIVDCR
GKGLTAIPANLPDTMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNHISEIAPDAFQGL
RSLNSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNK
IQTLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKR
IGQIKSKKFRCSAKEQYFIPGTEDTRLNNACNSDPVCPPKCRCESNVVDCSNLKLTKIPE
HIPTSTSELRLNNNDITALEATGVFKSLSQLKKINLSNNKITEIEDGSFEGASSVNELHL
TANQIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNQLTTITPGA
FDTLQTLSTLNLLANSFNCDCRLGWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPD
FRCEEGQEEPPSCVPRPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFNV
VPKELSTYKYLQLVDLSNNKINSLTNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLR
LLSLHGNEISELPDGIFNDVASLSHLAIGANPLHCDCHLRWLSDWVKTSYKEPGIARCAG
PQGMEGKLLLTTPAKKFECTGDVDTTVVAKCNPCVSSPCLNHGICHSDMVEIYRCSCPPG
FKGKNCETALDACLSSPCANRGTCQVNDGQEGQYSCTCPLGFEGPTCQTNIDECEDNDCE
NGATCIDGVNNYTCFCPPYYTGEMCEEMEDVCAPGRSPCKHQSTCLITSNGPKCVCSPGY
VGDDCSVDYNDCEEHRCQNGAQCVDELNGYACVCPEGYNGQLCEFLPSPLSLCERADCQN
NAPCLERGGRALCQCPPEFGGPRCEKLVSVNFIDRDSYLLLSDLKNWPQANITLQVSTAE
DNGILLYNGDNDHIAVELYQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMV
NLSIDGGLPTTMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSAGMPVAVHSGAFRLWQLQ
NGSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKIYCVHGICQPDGFQGPVCHCQ
PGWSGPQCDQTATNPCQGTKCVHGKCIPLDPQSYRCECEEGYRGALCNQQGELFNPCRRL
SCKHGRCQISDTGEAYCHCESGYTGGLCDAESECRGEPVRDFYQVQRGYAICQTTRMVSW
VECSGACDTGACCASQRMKRRKYTFECSDGTSFSEEVEKTIKCGCMGCM
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcagaggtggccgtttcggggcagtcccgggccggctggctgggccgccgctc
tggatgtgggtggcgatgctctctgcgctgctcgtgggcaacggcagtgcctgtccagcc
ctgtgtacctgcagcggcaccacagtcgactgccatggactgggtctcaggaccatgcca
cggaatatcccccgcaacaccgaaagactggagctgaacgggaataacctcacacgcatc
accaagagtgacttcgctggactcaagtacatccgagttttgcagctgatggaaaatcag
attactgtgattgagcgcggggcttttgatgacatgaaggagctggagagactgcggctg
aaccgtaatcaactgcagcagcttcccgagttgctgtttcagaagaacccggccctgtcg
cgactagatctgagcgagaacttcatccagtccatccccagaaaagcattcagaggagct
acggacatcaagaaccttcagctggataaaaaccacatcagctgcatcgaggatggagcc
tttcgagctctgagaggcttggaagtgctaacgctgaacaacaacaacatcagcagcata
cccgtctccagcttcaaccacatgcccaagctacgaacctttcgtctccactccaacaat
ctgaactgtgactgtcacttggcctggttggcccagtggctcagacagaggcctacaatc
ggtctatttacccagtgtaccgcccctttagagctcagaggactcaatgtggcagaggta
cagaaacacgaattcagctgctcaggtcaccaggaatccggcagccctcagccgtgcagc
atcggcgttggctcctgtcccgccatgtgcacctgcagcaacaacatcgtggactgtcgg
gggaaagggctcactgccatcccggccaacctgcccgacaccatggcggagatacgtctg
gagcagaatggaattaagtctgttcctcctggagccttctctccgtacaagaagctgcgt
aggatagacctgagcaacaaccacatttcagagatagctcccgatgccttccagggtctg
cgctccctcaactcccttgtgctgtatggaaataagatcactgacctacccaagggggtg
tttgacggcctctacgccctgcaactgctgttgctgaatgccaataagatacactgtgtt
cgtgcgaacgcctttcaggaccttcagaatctctcactgctatcgctctacgacaacaag
atccaaaccctcgccaagggcaccttcacttctctacgagctatacagacccttcacctg
gcccagaacccctttatttgtgactgtaatctgaagtggctggcggattacctgcgctcc
aaccccatcgagaccagcggcgcccgctgcgccagccctcggcgtctcgcaaacaaacgc
attggacagatcaagagcaagaagttccgctgctctgccaaagagcagtacttcatccca
ggcacagaggacacccgtctgaataatgcctgcaacagtgacccagtgtgtccgcccaag
tgccgctgtgagtcaaacgtggtggactgctccaacctgaagctcaccaagatccccgag
cacatccctacatccaccagtgaactccgcctcaataacaatgacatcaccgctctggag
gcaactggagtttttaagagcctttcccagctgaagaagattaacctcagcaacaacaag
atcacagagatcgaagacgggtcattcgaaggtgcttcatcggtcaatgagcttcacctc
acggccaatcagatcgactccgtccgaagcgggatgttccgtggcctcgaggggctgcgc
atgctgatgctgagaaacaacaagatcagctgcgtccacaacgacagcttcaccggcttg
cacaatgtccgcctgctgtctctgtacgacaaccagctgaccaccatcactcccggagcc
ttcgacaccctgcagactctctccaccctgaacctcttggcaaactccttcaactgtgac
tgccggctgggctggcttggcgattggctgaggagcaggaagatcgtgaccggtaaccct
cgctgccagcgccccgccttcctcaaggagattcctctgcaggatgtggccctgcccgac
ttccgttgtgaggagggccaagaggagccgccaagctgtgtgcccagaccccagtgtccg
agtgaatgcacttgcctcgagactgtggtgcgctgcagcaacaaacacctccacacactg
cccaaaggcatccccagaaacgtgactgaactgtacctggatggaaaccagttcaacgtg
gtgccaaaggagttgtcgacctacaaatacctacagctggtagacctgagcaacaacaag
atcaactctctgaccaactcgtccttcgctaacatgagccaactcaccactctaatcctg
agctacaactcgctacgttgtatccccaaaatggccttcagtggactgcactccctccga
ctgctgtctctccatggcaacgaaatctccgagcttcccgatggaatcttcaacgacgtg
gcctcgctgtcccacttggcaattggtgcaaaccccttgcactgtgactgtcacctgcgc
tggttatccgactgggtgaagaccagctacaaggagcctggcatcgcccgctgtgccggc
ccgcagggcatggaaggcaaactgctgctcaccacacccgccaagaagtttgagtgcaca
ggcgacgtggacactacggtggtggccaagtgtaacccctgtgtgtcaagcccctgcctg
aaccacggcatctgtcacagcgacatggtggagatctacaggtgcagctgtcctccggga
ttcaagggaaagaactgtgagacagctctggatgcctgtttgagttccccgtgtgccaat
agaggaacctgccaggtgaacgacggccaggagggacaatacagttgcacgtgtccactg
ggctttgagggccccacttgccaaaccaacattgacgaatgtgaggacaacgactgtgag
aacggcgccacctgcatcgatggagtcaacaactacacttgtttttgtcccccctactac
acaggggagatgtgtgaggaaatggaggacgtgtgtgccccgggacgcagcccctgcaaa
catcagtccacctgcctcatcacctccaatggccccaagtgcgtgtgctctcctggttat
gttggcgacgactgcagcgtagactacaacgactgcgaggagcatcgctgccagaacggc
gcccagtgtgtggacgagctcaacggatacgcctgcgtctgccctgaaggatacaacggc
cagctgtgcgagttcctcccgtccccgctgtccctgtgtgagcgggccgactgccagaac
aacgcgccgtgcttggagcggggcggccgcgcgctctgccagtgccccccggagttcggg
ggtccgcgctgcgagaagctggtcagcgtcaacttcatcgacagagactcctacctgctg
ctgtcggacctcaagaactggccccaggccaacatcaccttacaggtgtcaacagctgag
gacaatggtatcctgctgtacaatggggacaatgaccatattgcagtggagctctaccaa
ggtcacgtgaaggtcagctatgaccctggcagccagccgggacacgccatctacagcact
gagaccatcaacgatggccagttccacactgtggagctagtgacctttgaccagatggtg
aacctgtccatcgatgggggtctccccacaacaatggacagctttggggcggtgcggccc
ctgaacggggaggctccactatacgtggggggtaggggccctctccagaacacacctccc
tcctctgcaggaatgccggtggcggtgcactccggcgctttccgtctctggcagctccag
aacggttccagtttccacggatgtatccagaatctatacatcaacaatgagctccaggac
ttcaccaagacacagatgaagcccggcgtggtgccgggctgcgagccctgcaagaagatc
tactgcgtgcatggcatatgccagccggatgggttccagggaccagtgtgccactgccag
ccgggctggagtgggccgcagtgtgatcagacagccaccaacccctgccagggcaccaag
tgcgtccatggaaagtgcatccctctggaccctcagtcataccgctgcgagtgcgaggag
ggttaccgcggcgccctgtgcaaccaacagggagagctgttcaacccgtgccgtcgcctg
tcctgcaaacacggccgctgtcagatctcggacacgggggaggcctactgtcactgcgaa
agtggctacaccgggggactctgtgatgcagagtctgaatgccgaggggaacctgtgcga
gacttctaccaggtgcagcgaggctacgccatctgccagacgactcgcatggtctcctgg
gtggagtgctccggagcgtgtgacacgggggcctgctgcgccagccagcgaatgaaacgc
cggaaatacaccttcgagtgcagcgatggaacctccttcagcgaggaagtggaaaagacc
atcaagtgcggctgtatgggctgcatgtag
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integrated database retrieval system
