KEGG   Pungitius pungitius (ninespine stickleback): 119214271
Entry
119214271         CDS       T07626                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119214271 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppug03041]
    119214271 (smndc1)
Spliceosome [BR:ppug03041]
 Complex A
  U2 snRNP components
   U2 related factors
    119214271 (smndc1)
 Complex B
    119214271 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    119214271 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR SspH PUA_4
Other DBs
NCBI-GeneID: 119214271
NCBI-ProteinID: XP_037321834
LinkDB
Position
13:6453312..6457057
AA seq 236 aa
MSDDLTKQLSSYKAQLQQVEVALSTDQENEDLLKLQKDLQEVIDLTKDLLTSQPAESTSS
TNGSDAVPQKHGWKVGDSCLAVWKQDGQVYEAEIEEIDRENGTAAVTFAGYGNAEVIPLQ
NLKEVEEGKRSNEDGKPKSRKEQIAEQREYKKKKAQKKVLRMKELEQEREEQKSKWQSFN
NKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYHDTSKYNVRHLMPQ
NT seq 711 nt   +upstreamnt  +downstreamnt
atgtcggacgacttaacgaaacagttgagcagctacaaagcccagctacagcaagtagaa
gtcgctctatccaccgaccaagaaaatgaagacctccttaaactccagaaagacttgcag
gaagtcattgacttgacaaaagacctcctgacctcacagcccgcagaaagtacttccagt
accaatggctcagatgccgtaccccagaagcatggctggaaagtgggggacagctgttta
gctgtttggaagcaggatggacaggtgtatgaggctgagatcgaggagattgaccgggag
aacggcactgccgccgtgaccttcgctggctatgggaatgcagaagtgattcctctgcag
aacctcaaggaagtagaggaggggaaacgttccaacgaggatggaaagcccaaatcaagg
aaagagcagatcgcagagcagagagagtacaagaagaaaaaagcccagaagaaggtactg
agaatgaaggaattggagcaagaaagggaagaacaaaaatccaagtggcaaagtttcaac
aacaaagcctactcgaagaacaagaaaggacaggtaaagaggagcatatttgcatctcca
gaaagcgtcaatgggaaggtgggagtgggaacatgtggtatcgcagacaagccaatgacc
cagtaccacgacacgtcgaaatacaatgtcagacatctaatgccacaatga

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