Pungitius pungitius (ninespine stickleback): 119216882
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Entry
119216882 CDS
T07626
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119216882 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119216882 (lig4)
Enzymes [BR:
ppug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119216882 (lig4)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119216882 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
119216882
NCBI-ProteinID:
XP_037325981
LinkDB
All DBs
Position
3:24198355..24207508
Genome browser
AA seq
947 aa
AA seq
DB search
MLEHVLAPNGLPLSLLHAYIEISQDAPLQQQERTDFTMEGASSSDAAGQPFVAAQVPFLH
LCNTLEKIQKSKLRPEKSKILGDFIESWRKFHSALHKDNPKTNDSFYSAMRLIVPSFERD
RMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAPTTSQGEAGDFAGMAYFVLKKRCT
SPGTLSIKEVNDFLDSVAINNAGKQKDLVKKSLLHLITQSSALEQKWLIRMILKDMKLGI
SKETVLQVFHPDAAELYNVSTDLKKVCQQLHSPSVSLSEVSIGLFSAFKPMLAAVANIRN
VEKQMGNGPFYIQTKLDGERIQLHKDGDVYKYFSRNAFEYTQQFGGSPLQGSLTPHIHNA
FKGHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRLMEDSELQTCFCVFDVLLVNDQKLG
RETLRKRHETLQTVFTPVKGRLHLVPKADARTMHEVVNALNDAIDGREEGIMVKDPMSLY
KPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGKRGGILSHFLCAVAEAPKLGEMPS
VFHTLCRIGSGYTMKELYDLGLKLAKHWRVYRKNDPPASILCGTEKPEVYIEPCNSVIIQ
VRAAEIVGSDMYKTNCTLRFPRIEKIRDDKAWHQCMTLAELDQFRGKASGKLASRHLCID
GDEPQKKKRKLAAKPKKAVGIIDHFKPQDLSGVTKETDMFEDVEFCILNGTEDHPKAELE
KGVARCGGFVVQNPGRDTWCVIAGAENVRVKNLVSSDQHDVVWASWLLDCLARKEVVPWQ
PRHMIHMSPSTREHFAKEYDSYGDSYFADTDEQQLREVFGRMSGADLSAVASASQVEQRY
GWEDLCTSMFRPYRVYVDRYAEIGDPRTALATSCLEIRALEFRYHGGTVTESLEEGVSHV
IITEETRLLGLRTLRRCFRKKFKIVRDSWVTDSIKAGRLMNDAGYLV
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgctggagcacgtattagctccaaacggacttcctctctcccttctccacgcgtacata
gagatatcccaggatgcaccactgcagcagcaggagcggacagatttcaccatggagggg
gcgtccagcagcgatgctgcgggtcagccctttgttgctgctcaggttccgttccttcac
ctatgtaacactttagagaaaatccagaagtctaaactccggccggagaaatccaagatc
ctcggggatttcattgagtcgtggaggaagttccattcggccctgcacaaagacaacccc
aaaacgaacgactccttctactctgccatgcgcctcatagtaccctccttcgaacgagac
cggatggcgtacggcataaaagagaacatgttagccaaactctacatcgacgtgctgggc
ctcccaaagaacggcccggaagccaataaactgttgaactaccgcgctccgactacgtct
caaggagaagccggagactttgctggcatggcgtactttgtgctaaagaaacggtgcacc
agcccagggacccttagcatcaaggaagtcaatgactttctggactctgtggccatcaac
aacgcgggcaagcagaaggatctggtgaagaagagcctgctgcacctcatcacccagagc
tcggctctggagcaaaaatggctcatccggatgatcctgaaggacatgaagctcgggatc
agcaaagagactgtgctccaggtcttccacccggacgcggccgagctctacaacgtcagc
acggacttgaaaaaggtgtgccagcagctccacagcccctccgtgtccttaagcgaagtc
tccatcgggctcttctctgccttcaagccgatgttggcggccgtggcgaacatccgcaac
gtggagaagcagatggggaacggccctttttacattcagaccaagctggacggggagcgc
attcagctgcacaaagacggcgacgtgtacaagtacttcagcaggaacgcctttgaatac
acccagcagttcggaggatccccgctgcagggctccctgacgccgcacatccacaacgct
ttcaaaggccacgtcgtcaactgcatcctcgacggggagatgatggcgtacaacccgacc
acggagaccttcatgcaaaaagggagcaagttcgacatcaagaggctcatggaggactcc
gagctgcagacgtgcttctgcgtcttcgacgtgttgctggtcaatgaccagaagctcggc
agggagaccctgaggaagcgccacgagacccttcagacggtcttcacgccggtcaagggg
cgactgcacctggtgccgaaggccgacgcccggaccatgcacgaggtggtgaacgcgctg
aacgacgccattgacggcagagaggaggggatcatggtgaaggaccccatgtccctctac
aagcccgacaagaggggggaggggtggctgaaaataaagccggagtacgtggacggcctg
atggatgagctcgacctgctgattgtcggcggctactggggcaaagggaaacggggcggc
attttgtcccacttcttatgcgccgtcgccgaagccccaaagctcggcgagatgccctcc
gttttccacactctctgccgcatcggctcgggctacaccatgaaggagctgtacgacctc
ggcctgaagctggccaagcactggcgcgtctaccggaagaacgacccgccagcgtccatc
ctgtgcggaacagagaagccggaggtctacatcgagccctgcaactcggtcatcatccag
gtccgggcggccgagatagtcggcagcgacatgtacaagaccaactgcaccctgcgcttc
cccaggatcgagaagatccgcgacgacaaggcgtggcaccagtgcatgaccctggccgag
ctggatcagttccgcggcaaggcgtccgggaagcttgcctcacggcacctctgcatcgac
ggcgacgaaccgcagaagaagaagcgcaagctggcggccaaacccaagaaggcggtcggg
atcatcgaccacttcaagccgcaggatctctccggggtcaccaaggagacggacatgttt
gaggatgtggagttctgcatcctgaacggcacagaggatcaccccaaggccgagctggag
aagggcgtggccaggtgtggaggtttcgtggtccagaacccaggtcgggacacctggtgc
gtgatcgccggcgctgagaacgtgcgcgtgaagaacctggtctcgtccgaccagcacgac
gtggtgtgggcctcctggctgctggactgcctggcccggaaggaggtggtgccgtggcag
ccgcgccacatgatccatatgtcgccctccacccgggagcactttgcaaaggagtacgac
agctacggcgacagctacttcgccgacacggacgagcagcagctgagggaggtgttcggg
cggatgagcggcgcggacctgtccgcggtggcgagcgccagccaggtggagcagcgctac
ggctgggaggacctttgcaccagcatgttcagaccctaccgggtctacgtggaccgctac
gccgagataggagacccgcgaaccgccctggccaccagctgtttggagataagggctctg
gagttccgctaccacggaggtactgtgacggagagtttagaggaaggagtctctcatgtc
attatcacagaggagacgagacttctgggtttaaggactctgagacgctgcttcaggaag
aagttcaagatcgttagggactcatgggtgacggattccatcaaagcggggcgcctgatg
aatgacgcgggctatttggtctga
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