Pungitius pungitius (ninespine stickleback): 119218472
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Entry
119218472 CDS
T07626
Symbol
ldlrb
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03272
Virion - Hepatitis viruses
ppug04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
119218472 (ldlrb)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119218472 (ldlrb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119218472 (ldlrb)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119218472 (ldlrb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
TMEM154
EGF
PspB
Motif
Other DBs
NCBI-GeneID:
119218472
NCBI-ProteinID:
XP_037328836
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Position
9:complement(3693327..3703192)
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AA seq
861 aa
AA seq
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MTWILGLCTWGLLVLLQTSPQADAAFTCSSTQLRCGNGRCVTTRWICDGTDDCGDGTDEL
PATCATKTCLQSEFSCGAPTNQCIPGAWHCDGKAECINGADENNCTAKQCSPGEFQCTNG
QCVSPDFVCDGDSDCSDDSDEASCPKPTCSSQSFQCNNSACVPTRWRCDGDADCPDGSDE
WPQNCEGRLPDKTQVTCGVHDFQCANGECIHSSWRCDGGDDCSDHSDEFNCSVPTCRPDE
FQCNDGVCIHGSRQCDQVPDCRDLSDEVDCHPANGCEGPEKFQCHNGECISMDKVCDQRS
DCRDRSDEPRECDQNECLTENGGCSHSCNNLKVGYNCSCPPGYSLNADKKTCEDINECAE
ADTCTQTCINLPGSYRCDCGEGYKVDPVSKTCRAELGTEPTLYFTNRHEVRKMAVDRSEY
VRLIPELKNAVALDMDMPKKMIFWSDLSLKKIYSSKLDVAGSSSYHSEVIGSGIEAPEGI
AVDWVHGNIYWTDSVLKTISVATTDGSKRKTLITQNLEKPRAIAVDPINNFMYWTDWGEE
AKIEKSGLNGRYRVALVTDNIMWPNGLTLDVVNQRLYWVDSKMHTLSSIGVKGESRHSLI
YSEEKLAHPLSLTVFEDRVFWTDLSNRAVFSADRRTGKEITLLAADLDHPEDIVLYHDLK
QPIGINSCTESGKNGGCEFLCLPAPQINQHSPKYTCACPDHMTLGPEKRTCVTAPSVAPP
RENRTSAPLRPTVPATTATPAATSTTSTTSRTSTPSSRQQSTQQSAATAQGNRLEASPEE
AHSSHPVALSVILPILVMSVLVVGAMWLWRHWRVKNTNTIHFDNPVYQKTTEDEMHICRN
TSEGYVYPQRQMVSMDDMDVA
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgacgtggatcctcgggctgtgcacatggggcctgctggtgctgcttcaaacttcgcca
caagccgatgcagccttcacatgcagctccactcagttgaggtgtggaaacgggaggtgc
gtcaccaccaggtggatctgtgatggtaccgacgactgcggtgatggaactgatgaactt
cctgcaacctgtgcaaccaagacgtgtctgcagtccgagttcagctgcggcgctcccacc
aaccagtgtattcctggagcctggcattgtgacggcaaagccgaatgcatcaacggggcc
gacgagaataactgcacggccaagcaatgcagccccggcgagtttcagtgcaccaacggc
caatgtgtttcccccgacttcgtctgcgacggcgacagcgactgttcggacgactctgac
gaggcctcctgccccaaacccacctgcagctctcagtccttccagtgcaacaactcggcg
tgcgtgccgacccggtggcgctgcgacggagacgccgactgccccgacggttcggacgag
tggccgcagaactgtgaggggcggctgccggacaagacgcaggtgacctgcggagtgcac
gacttccagtgtgcaaacggggagtgtatccacagcagctggaggtgtgacggaggcgac
gactgctcggatcattccgacgagttcaactgcagcgtccccacttgtcgccccgatgaa
ttccagtgtaatgacggtgtttgtatccacggcagccgccaatgtgaccaagtgcccgac
tgcagggacctcagcgatgaggttgactgccacccagcaaatggatgtgaaggccccgag
aagttccagtgtcacaacggggagtgcatcagcatggacaaggtgtgcgaccagcgaagc
gactgcagggaccggtccgatgagccgagggagtgtgaccaaaacgagtgtttaacggaa
aacggcgggtgctcccattcctgcaacaacctgaaggtcggctacaactgctcctgccct
cccggatacagcctcaacgcggacaagaagacgtgtgaagacatcaatgaatgtgctgag
gcggacacttgcactcagacctgcatcaacctgcctggcagctacaggtgtgattgtggt
gagggctacaaggtcgacccagtgagcaagacctgcagggccgaattaggcacagaaccc
acactctacttcaccaatagacacgaggtgaggaagatggcggtggaccgcagcgagtac
gtccggctgatccccgagctgaagaacgccgtggctctggacatggacatgcctaagaag
atgatcttctggtctgacctgtctctcaagaagatctacagctcaaagttagacgtggcg
gggagctcctcctaccactctgaggttattggaagcggcattgaggccccagaaggcatt
gcggtggattgggtccatggcaacatttactggactgacagcgttttgaagactatctcc
gtggcaacgacagacggcagcaagaggaagaccctgatcacacaaaatctggagaagccg
agagccatcgcagtcgaccctatcaataactttatgtactggacagactggggggaggag
gccaagatagagaagagcgggttgaacggacggtatcgcgttgccctggtaacagataac
atcatgtggcccaatggcttgaccctcgacgtggtcaaccagcgtctgtactgggtggac
tccaagatgcacaccctgtccagcattggtgtgaaaggagagagtcggcacagcctcatt
tacagcgaggagaagctggcgcaccccctctccttgactgtctttgaggaccgagtgttt
tggacagacctctccaacagggctgttttcagtgccgaccgccggaccgggaaggagatc
actctgctggctgcggacctggaccatccagaggacatcgtcctgtaccacgacctcaag
cagccaatcggtataaacagttgcacagagagtggtaagaacggaggatgcgagttcctg
tgccttcccgccccgcagatcaaccagcactctcctaaatacacctgtgcctgccctgac
cacatgaccttgggacccgagaagaggacatgtgtgacagcaccctccgttgcccctcca
cgcgaaaaccgaactagtgcaccgctccggcccacagtgcctgctaccacggctacgccg
gctgccaccagcaccacaagcaccacaagccggacttccactccctcgtcccgccagcaa
agcacacagcagtctgccgctactgctcaaggcaaccgattggaagcctcgcccgaagaa
gcccattcatcccaccctgtggccctctccgtcatactgccgatattggtcatgtccgtg
ctggtggttggagcgatgtggctatggagacactggcgtgtgaagaacaccaacaccatc
cactttgataatccagtgtaccagaaaaccacggaggacgagatgcacatctgcaggaac
acctctgagggctatgtttatccacagaggcagatggtgagcatggacgacatggatgtg
gcatga
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