Pungitius pungitius (ninespine stickleback): 119219920
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Entry
119219920 CDS
T07626
Symbol
ldlra
Name
(RefSeq) low density lipoprotein receptor a
KO
K12473
low-density lipoprotein receptor
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03272
Virion - Hepatitis viruses
ppug04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
119219920 (ldlra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119219920 (ldlra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119219920 (ldlra)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119219920 (ldlra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
DUF5050
Vgb_lyase
hEGF
Psg1
EGF_3
Motif
Other DBs
NCBI-GeneID:
119219920
NCBI-ProteinID:
XP_037331326
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All DBs
Position
12:19230050..19241121
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AA seq
907 aa
AA seq
DB search
MRLPVRPDDMGRPPRALLLLLLLCSFARTNAWTACGARQFQCGNSKCITARWVCDGADDC
GDGTDELPGTCMAKTCRPTEFRCADPLNQCVPSTWRCDGKADCANGADEESCAPKPCADG
EFRCTNGQCVSSSFVCDDEADCDDGSDEASCRPVTCSATSFQCSNGVCVPRLWACDGDTD
CADGSDEWPQNCGTVAPKSAPADQCSSLEFRCASGECIHSSWRCDGGGDCRDQSDEVNCA
ISTCRPDEFQCGDGTCIHGSRQCDRQYDCRDMSDETGCVNATLCDGPSRFKCRSGECISM
EKVCDHRRDCRDWSDEPLRDCGSNECSYNNGGCSHICNDLKIGYECLCRTGFHLVEKKRC
EDIDECANLDTCSQICINQIGSYKCECEEGYQVDPATKACKAIGSIAYLFFTNRHEVRKM
TLDRSEYTRIIPRLKNVVAIDMNMAGNEIYWSDISQKKIYRAPVDSADDPAHHSVVIGSN
VEAPEGIAFDWIHGNLYWTDSIRRTVSMVTADGSRRKTLFNQDLSKPRAIVVDPHSNFIY
WTDWGNAAKIEKAGLNGGDRTALVTDNIEWPNGITLDLLNQQLYWVDSKLHTLSSISAQG
GGRRTLIIDEHKLGHPLSLTVFEESVFWTDISNNAIFSANRVTGEDITPVAEHLSSPDDI
ILYHNLKQPTGRDWCENSRCEFLCLAAPQVGGHAPKYTCVCPDNMMLAADMRTCGPVVPT
PAAPVEPQLPDVDSPSQPTESFSTTSKPRVPTTLRPTLRSTAAPVVITSTAARPVPRSTK
PPAGTATPEPRTTDPELPKTTTGAPVTSPDFKHRFVAVPSTASPAPIALYIALPLALVCL
VAVGGSLLWRNYRLKNTNTIHFDNPVYQKTTEDQVHIWSHSPDGYSYPKRQVVSLEEEAD
NPAFAEN
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttccagtgcggccggacgacatgggacggcccccccgcgcgcttctcctgctc
cttcttctgtgctcctttgctcggacaaatgcatggacagcatgtggagccaggcagttc
cagtgtgggaacagcaaatgcatcacggccagatgggtgtgcgacggcgcggacgactgc
ggcgacggcacggatgagcttcccggtacctgcatggccaaaacgtgtcggccgacagag
ttccgctgtgcggatcccctcaaccagtgcgtaccgagcacctggcgctgtgatggaaag
gccgactgtgcgaatggagctgatgaagagagctgtgcgccaaagccgtgcgcggacggc
gagttccgctgcacgaacggtcagtgcgtgtcgtcctccttcgtgtgcgacgacgaggcc
gactgcgacgacggcagcgacgaggcctcctgccgcccggttacctgcagcgccacgtcc
ttccagtgcagcaacggcgtctgcgtgccccgcctgtgggcctgcgacggcgacaccgac
tgcgccgacggctccgacgagtggccccaaaactgcggcacggtggcgcccaagtcggct
cccgctgaccagtgctcgtcgctggagttccgctgcgccagcggggagtgcatccacagc
agctggaggtgcgacggcggaggcgactgccgcgaccagtcggacgaagtcaactgcgcc
atttccacctgccgacccgatgagtttcaatgcggcgacggcacctgcatccacggcagc
cgccagtgcgaccgccagtacgactgccgggacatgagcgacgaaacgggctgcgtcaat
gccaccctctgtgatggtccgagcagattcaagtgccgcagtggggaatgcataagcatg
gagaaggtgtgtgaccatcggcgtgattgcagggattggtcagatgagccactcagggat
tgtggctccaacgagtgctcgtacaacaatggcggctgctctcatatttgcaacgatctg
aagatcggctacgagtgcctgtgtcgcactgggtttcacctggttgagaaaaagcgctgt
gaagatattgacgagtgcgccaacctggacacctgcagccagatctgcatcaaccagatc
ggcagttacaaatgcgaatgcgaggaaggttaccaggtcgaccccgcaaccaaagcctgc
aaagccatcggttcgatagcctaccttttcttcacaaaccgccatgaagtcagaaagatg
actttggacagaagtgaatacaccagaataattcctcgtttaaagaacgttgtggctatc
gacatgaacatggccggcaacgagatctactggtcagacatctcccagaagaagatctac
agagctccagtggactcggccgacgaccccgctcaccacagcgtggtgatcgggagcaac
gttgaagctccggagggcatcgctttcgactggatccacggtaacctgtactggaccgac
agcattcgcaggaccgtctccatggtaactgctgatggcagccggcgcaagactctcttc
aaccaagacttatccaaacctcgcgctattgtggtcgacccccacagcaacttcatttat
tggaccgactgggggaacgccgctaagattgagaaggcaggtcttaacggaggagaccga
actgctctggtcactgacaacattgagtggcctaatggaattacacttgatctgttgaac
cagcagctctactgggtggactctaagctgcacaccctctccagcatcagcgcgcagggc
ggcggtcgacgcaccctcatcattgacgaacacaagctgggtcatccgctgagcctcact
gtgtttgaggagagtgtgttctggacagacatcagtaacaacgccatcttcagcgcaaac
agggtgactggtgaggacatcacaccagtggcggagcacctatcatcaccggatgatatt
attctttaccataacctcaaacaacccactgggagggattggtgcgagaattccagatgt
gaattcctgtgcctggcagctccccaagtgggcggacatgcccccaagtacacctgcgtc
tgtccagataacatgatgttagcggcggatatgaggacatgtggacctgttgtgccaaca
cctgcagctcccgttgagcctcagttgccagatgtcgactctccttctcagccaacagag
tccttcagcaccacatccaagccccgtgtccccaccacgctgaggcccacgctccgcagc
accgcagcgcccgtagttatcaccagcaccgccgccaggcccgtgccgcgcagcaccaag
cctcctgcagggaccgccacaccggaaccaaggaccacggaccctgagctcccaaagacc
acaacgggggctccggtcacctctccagatttcaaacatcgatttgtggcagtacccagc
accgcctcccctgccccgattgctctgtatattgcattacctctggcactcgtttgcctg
gtggctgtcggggggtcgctgctgtggaggaactacaggctgaagaacacaaacaccatt
cattttgacaaccctgtctatcagaaaaccaccgaggaccaagtgcacatttggagccac
agccctgacggttactcctaccctaaaagacaagttgtgagcttggaggaagaggcagac
aatccggccttcgcagagaactga
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