Pungitius pungitius (ninespine stickleback): 119220417
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Entry
119220417 CDS
T07626
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119220417 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119220417 (eftud2)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119220417 (eftud2)
Complex C
U5 SnRNP specific factors
119220417 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
119220417
NCBI-ProteinID:
XP_037332333
LinkDB
All DBs
Position
12:4747356..4758964
Genome browser
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAEDRDVDEGDDDDEDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRHKRFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSAPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSTCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGARSKIEHTYNGGLDSDLAEAMTECDPEGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttggaaactacatcggtccagagctggactctgat
gacgatgaggatgatctggatgccgaggacagagatgttgacgagggtgacgatgatgat
gaagatgaacccgccgatgccgacgaggacgtccctggtatggaggtggtcctgcacgag
gacaagaagtactatcctacagcagaggaagtttatggccccgaagtggaaactattgtc
caggaggaagacacacaacctctcacagagcccatcatcaagcctgtgaggcacaagcgg
ttcacactgatggaacaggagttacctgccaccgtctatgatatggagttccttgcggat
ttgatggacggtcctgagctaatccgtaacgtcaccctgtgtggacatcttcaccacggc
aagacctgtttcgtggactgcctgattgaacagacgcacccagaaatcaggaagagggac
gatgtggatctgcgatacaccgacatcctcttcaccgaacaggagagaggtgtgggtatc
aagagcgcccccgtcacaatggtcctgccagactccagaggaaaatcctaccttttcaac
atcatggacacaccaggccacgtgaacttctctgacgaggtcacttctagtatccggctc
tcggacggcatcgtccttttcatagacgcagcagaaggagtgatgctgaacacagagcgc
ctgatcaaacacgcggttcaggagcgaatggccatcaccatctgcatcaacaaggtggac
cggctcatcggggagctcaaattgccccccacagatgcttactataaactccgccacatc
gtggatgaggtcaatggtttgctcagcacatactccacggatgagaacttggtggtgtct
cctctgctaggcaatgtgtgcttcgccagctctcagtacagtacctgcttcaccctcggg
tcttttgcaaagatctactcggacacctatggtgacatcaactataatgagtttgccaag
aggctctggggagatatttatttcaaccccaaaactcgcaagttcacaaagaaagcgccc
agcagcaactcccagcgcagctttgtggaatttgttctggagcctctctacaagatcctc
tcacaggtggtcggggacgtggacacgtctctccccagagttctggatgaactggggatc
cacctcaccaaagaagagctgaagctgaacatcagacccttactcagactggtctgcaac
cgcttctttggagagttcactggcttcgtggacatgtgtgtacatcacatcccctcacca
caggagggtgctaggagcaagatagagcacacgtacaacggaggtctggactcggacctc
gcggaggccatgacggagtgcgaccctgaaggtcctttgatgtgccacaccaccaagatg
tacagcacggaggatggggttcagttccacgcgttcggccgggtgctgagtgggaccatt
caggcgggtcagcctgtcaaggtgttgggagagaactacacccttgaagacgaggaggac
tcccaggtctgcactgtgggccggctctggatttcagtcgccagataccaaattgaagtg
aacagagtccctgcgggcaactgggttctaatcgaaggctgcgatcagccaatcgtcaag
acggcaacaatcacggagcccagagggaacgaagaggctcagattttcaggccactgaag
ttcaacacagcatcagttataaagatcgcagtggagcccgtcaacccttcagagctaccc
aaaatgttggacggactgaggaaggtcaacaagagctacccgtccctcaccacaaaggtg
gaggaatccggagagcatgttatcttggggacaggagagctctacctggactgcgtcatg
cacgacctgcgcaagatgtactccgagatcgacattaaagtcgctgacccggtcgtgacc
ttctgtgaaacggttgtagagacttcttcactcaagtgcttcgctgaaacgccaaacaaa
aagaacaagatcaccatgattgcagagcccttggagaaggggctagctgaggacatcgag
aacgaagtggtacagatcacgtggaacaggaagaagctgggagagtttttccagacaaag
tacgactgggatctgctggccgccaggtccatctgggccttcggaccggacaccacggga
ccaaacatcctggtagatgacacgctgccctctgaggtggacaaggcgctgctcggctca
gtcaaagacagcatcgttcagggcttccagtggggcaccagagaggggcctctgtgtgat
gagcccatcaggaatgtcaagtttaagatcctcgatgccgtcattgctcaggagcctctc
cacagaggagggggccaggtcatccccacagccaggagagtggtgtactctgctttcctc
atggccactcctaggttgatggagccgtattactttgtggaggttcaggctccagctgac
tgcgtatctgctgtctacacagtgctggctcgaagaaggggtcacgtgacccaggatgcg
cccattccagggtctcctctctacaccatcaaggctttcatcccggccatcgactccttc
ggctttgagacggaccttcgcacgcacacgcagggacaggccttcgctctgtctgtgttc
caccactggcagatcgtccccggtgaccccctggacaagagcatcgtgatccggcctctc
gagcctcagcccgccccccacctggcccgggagttcatgatcaagacccgaaggcgcaag
ggtctcagtgaggatgtgagcatcagcaagttcttcgatgatcccatgttgttggagctg
gccaaacaggacgtggtgcttaactacccaatgtga
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