Pungitius pungitius (ninespine stickleback): 119221125
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Entry
119221125 CDS
T07626
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119221125 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119221125 (smcr8a)
Membrane trafficking [BR:
ppug04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
119221125 (smcr8a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
119221125
NCBI-ProteinID:
XP_037333480
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All DBs
Position
12:complement(12343807..12350457)
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AA seq
932 aa
AA seq
DB search
MIGSPDVVAFTKEDEYGQTPDPWALPEEFSFPLHPLADSNPWAKTSYAKFTKDFILISEF
SEQVGPQPLLTIPDEPKVCGTFDLNYFSLRIMSVDYQASFVGHPPGSGYPRLSFVEDSKV
VLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYVSADERKIMLQFQELSLCFSRASECL
KAGNRRAFAKELQRKLRDLEYTHSVLQREEGLQREAGPQCMYSAHAVEKANELANVEKSI
YEHRDLLRQISSYQHRPRRDPHAVTCQKCVTECLSECEQLLDKYAKLAKPFRYTDQRGNR
EEGQDQVGDEGGGEEMDEGEDEGVKRRSSYTPQLIKAKSAKCFDKRLKTLQELCDNTFYD
ATVEVLKETERSFRGDLCYLHTRRLDRVVRRNLRVTNFLFEEDLGDEDEDERGTIRPFCA
VNHAVDNFTLLNPPPIVLGPEPPPDPLDAAAVTSHTLESELGLVESHLESSPSDQTLETQ
GSSEETKGSFSSDKSGMGLAERDQNQACMKSEAPDSDLTPDPDPERESSSEEMETTAGED
EGDGTPVSLLEVVSELEARREGDCDGATDEPCEMQSDLLVPLDTACCMAQDGFLYEASAP
EAVPSLGQSSHLQPYQTLVINQEPQALLHLQDDYAVGAPSSGSPAAGLELPVGLLGDEVS
QTSVEDGCDSAMSASTGSDQAASPLGYGGVVTLRQRKKAGQGALRFVRQYPFAIQALWCL
LSGRTLVVLGVDERVVRRLVAALALFVPNPGKCGERVQAWLSCPFTLTDLQRWKLVGLQR
VASPVGSSMLYSLSRYSRYISILDADHKTLRCPSYRGHLLAKIADHRTYIRRGSTYFLHL
QSALCHLAAKAFLFTFTHHLHLPVSSMEGPEVVEGRRLCFLQEQLGLGEEDSQILLYLSQ
LITQQYLQPVGGSRAAATGFSFNYTTSVLYKI
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgataggctcacctgacgtggtggcgttcactaaagaggacgagtatgggcagactccg
gacccctgggctctccccgaggagttctccttccctctccatccgctggctgactcaaac
ccctgggccaagacctcctacgccaagttcaccaaagacttcatcctgatctctgagttc
tccgagcaggtgggcccccagcccctcctcaccatcccagatgagcccaaagtctgcggc
accttcgatctcaactacttctccctgcgcatcatgtccgtggactaccaggcctctttt
gtcggacatccacctggcagtggctaccctaggctcagttttgtggaggactccaaggtg
gtgctgggcgactcaaaggagggggcgttcgcctacgtccatcacctcactctttacgac
ctggaggcgaggggctttgtgcgaccgttctgtatggcgtacgtgtcggcagacgagagg
aaaataatgctgcagtttcaggagctgtcactctgcttctcgcgggcctctgagtgcttg
aaggccgggaaccggagagcattcgccaaggaactccagaggaagctccgggacctggag
tacactcactccgtgctgcagagggaagagggcctgcagagggaggcggggcctcagtgt
atgtactccgctcatgctgttgagaaggccaatgagcttgcaaatgtggagaagagcatc
tatgaacacagagacctgttgaggcagatcagctcctaccaacaccgcccacgcagagac
cctcacgctgtcacctgccagaagtgtgtcactgagtgcttgagtgagtgcgagcagctg
ttggacaaatacgccaagctcgccaagcccttccgttacaccgaccaacgggggaacagg
gaggagggtcaggaccaggttggcgatgagggaggtggagaagaaatggacgagggggaa
gacgagggcgtaaagcgcaggtcgtcctacacgccacagctgatcaaggctaagtcagca
aagtgcttcgacaagcggctgaagaccctgcaggagctgtgtgacaatactttctacgac
gctaccgtggaggtcctgaaagagacggagaggagtttccggggcgacctgtgttacctg
cacactcgccgcctggacagggtagtgcgcaggaatctgagagttaccaatttccttttt
gaggaggacctcggagatgaggatgaggatgaaagaggaacaataaggccattttgcgct
gtgaaccacgctgtagataactttacactgttaaacccacctcctattgtgctaggacca
gaaccgcctccagacccgttagacgcagccgctgtgaccagccacactctggagagcgag
cttgggcttgtggagagccatctggagtcctccccttcagaccagactctggagacccag
ggcagctcggaagagacaaaaggaagcttcagcagcgataagagcgggatgggactcgca
gagagggaccagaatcaggcttgtatgaagtccgaagcccctgattctgacttgacccct
gaccccgacccggagagggagagcagcagcgaagagatggagaccactgccggagaggac
gagggagacgggacacccgtgtccttgctggaggtggtgtcggagctggaggcccgcagg
gagggtgattgtgatggtgcaactgatgagccctgtgagatgcagtctgacttgttggtt
cctttggacaccgcgtgttgtatggcccaagatggtttcctttatgaggcttctgcccca
gaggcggtgccttctctcggccaaagctcccacctacagccctaccaaacactggtgatc
aaccaggaaccccaggccctgcttcacctccaggacgactacgcggtgggcgccccatcc
tcaggaagccccgcggctggcctggagctgcctgtgggactcctcggagatgaagtttcc
caaacctcggtggaggacgggtgtgactctgccatgagtgcttctacggggtccgatcag
gctgcctcacctctgggctacgggggggttgtgaccctgcgtcagaggaagaaggctgga
caaggagccttgaggtttgtcagacagtaccccttcgccattcaagctctgtggtgcctg
ctgagcggcagaaccctggtggtgctcggggtagatgagcgggtggtccgcagactggtt
gcggctctggccctctttgtgcctaatcccgggaagtgtggagagcgggttcaagcctgg
ctgtcctgccccttcacccttactgacctgcagaggtggaagcttgttgggttgcaaaga
gtggcgtcccctgtgggttccagcatgctttactcgctgtcccggtacagtcgctacatc
tccatcctggatgccgaccacaagaccttgcgctgcccgtcttatcggggtcacctcctt
gccaaaatagcagaccaccgcacctacatccgccgcggttccacctacttcctccaccta
cagagcgcactctgtcacctggcagccaaggccttcctgtttaccttcacccaccacctc
cacctgccggtcagctccatggaggggcccgaggttgtggagggcagacgcctctgcttc
ctgcaggagcagctgggtctgggtgaagaggacagccagatactgctctacctcagccag
ctcatcacgcagcagtacctgcagccggtcggcgggagccgagcagcagcaactggcttt
agtttcaactacactaccagcgttttgtacaaaatctga
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