Pungitius pungitius (ninespine stickleback): 119222317
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Entry
119222317 CDS
T07626
Symbol
agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119222317 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119222317 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ppug00535
]
119222317 (agrn)
Proteoglycans [BR:
ppug00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119222317 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
EGF_laminin
EGF
Kazal_CFAI
SEA
Laminin_G_3
hEGF
IclR_C
Motif
Other DBs
NCBI-GeneID:
119222317
NCBI-ProteinID:
XP_037334755
LinkDB
All DBs
Position
1:complement(23781502..23983622)
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AA seq
2122 aa
AA seq
DB search
MGSRRTLGAGRTALLVAGLLAALWHRCSAGCPERDLENREEEANIVLTGTVDEIINLDPV
HNTYSCKVRVWRYLKGKSDVNQEILLDGGNKLMIGGFGNPGICDNQVATGDTRIFFLNPA
LEAMGPEHKNELMLNSSLMRITLRNLEDVEHCVEAHKYINADKPPHFTPPQPPDSCKGML
CGFGAVCEFDQADPAHAKCVCKRADCPSLVAPVCGSDSSTYSNECELEKAQCNTQRRIKV
LRKGPCSLKDPCTEVACSYGSTCIQSSDGLSAKCMCPLGCEGKREQTVCGSDGEDYRNEC
LLHRHACKNQKNIRVQYLGPCDLCKENENNLNTMCRVRTLTRQTIVFRPPEMCPVANEPL
CASDGQTYSSECAMDATGLQKGIKLRKIHAGPCKRLERCQEACPFNGVCVVEQQSARCSC
EPIECDGTYKPVCGRDGRTYTNDCARRRAECLGRLLIAIKHPGPCDLSIPSPCLGKECDH
GAVCVVKNGEPVCECPEACPQTSDPVCGSDGHSYGSPCEMRAMGCALQRAIQIQHKGPCD
EACANCSFGAICDAQSGQCVCATECVESHQPVCGSDGSTYNSECELHVRACKQQTDLRVV
SQGECKTCGSTVCAWGAICVKNKCECQQCSGEGLALVCGSDGVTYKNECELRTSSCMQKT
QIDVAKPGSCDEDCGSGGSGSGAESCEQDRCRMFGGSWDEDAEDDRCVCDFSCQSVPLNT
VCGSDGKNYSNECQLKKARCEKQEHLMTQNQGSCAAISATSPPAPTPPQHCSHSVYGCCH
DNVTAALGVGLAGCPSTCQCNVHGSYKGTCDPASGQCSCKPGVGGQKCDRCEPGFWNFRG
IVTENMSGCTPCNCDATGSVRDDCEQMSGLCSCKTGVKGMKCNVCPDGSKMGTNGCGEAP
EAPGSCDKLVCKFGATCKEVNGQAHCECPPPDCDDQNKTQVCGSNGETYADQCQLRTIAC
RLREDIAVQHFGQCTDTISEPAERPTPKPPATTTAAATTTTPAPFLPNQVFALPPPRTKE
PETPRRPPPTAHSSTLMHNRAKPNQTIPTEPRRATPAHSSRRIPVSSGSAMSSEGSGSGE
PSGDDQTEEEEEEEQEEEAGSGIPTEASGAEETVGSTLASTTAPTAEERSSCDNTEFGCC
PDGKTPSSTPEGANCPSTMRFSGFLHLDQVEGQEIFYTREMEDPKSELFGETARSIEGAL
NELFRKSAAHKDFMSVRVRNLAPSNSILAFVEAHFKPDTRLTVEDIEGALLKQLKASRES
GIAVKKPEDENIRFTNYGLSSVPFFTTTSTTTTASVTTAAPATTTTTTTTATPSTTTRPP
PTSMYITRRPPGTTRRPNSGRRTTTTTTSAPVTTPVPTTTTTTTTAITSTEPHPATTAAH
SRGRPSHRPAKPCASHPCLHGGTCEEEGNDFSCQCPAGRGGSVCEKVIRYFIPSFGGQSY
LAFPTMSAYHTVRIAMEFRASEMTGVLLYNGQTGKKDFISLALVNGKVELRFNTGSGTGT
VVSKVQVHQGRWHQLVLTRNRRSAMLSVDNEPHIEGESPQGTDGLNLDTDLFVGGVPEDI
KQDVRERTAVATGLVGCIRMLDVNNRRLNLQESGGDSMYGSGVGECGNNPCQPNPCKNGA
ACQVKEAEMFHCKCSKGFWGPTCADVHDPCEPNTCHSSSRCQALPEGGYKCECPMGREGR
HCETVAERRGAYMPLFNGDSYLELKGLHLYGQDLRQKVSMTVVLMANDSNGLIFYNGQKS
DGRGDFISLSLNDGFLEFRYDLGKGPATIRSLKKMQLNVWNTINLERSNRKGEITVNRKD
PVRGEAPKSRKNLHIDLNLKESLFVGGAPDYSRLARVAALTEGFRGTIQEIILMGNPILR
EENALRSSSVAMFQDHPCSQEPCHNGGICKPTLQTYECLCLHGFRGERCQSTVYEKAAGE
PEAIAFDGRTFIEYHNAVTKSQLTNEIPDPESLENPSDQSEKALLVNKFELSIRTETTQG
LVLWSGKGVERSDYIALAIVDGHVQMTYDLGSKPVVLRSSVRVDTNRWIRIKASRALRDG
SLQVGNEAAVTGSSPLAATQLDTDGALWLGGLEELAVARRLPKAYSTSFVGCIKDVVVDG
VELHLVEDALNSPQILHCSAAK
NT seq
6369 nt
NT seq
+upstream
nt +downstream
nt
atgggttcccggcggacactcggggccggccggacagcgctgctcgtggcggggctgctc
gcggctctgtggcaccgctgctccgcgggctgcccggagagagacctggagaacagggaa
gaggaggccaacatagttttgaccggcaccgtggacgaaataatcaacctggacccggtg
cacaatacgtactcgtgcaaggtcagggtgtggcgctacttgaaagggaagtccgacgtc
aaccaggaaattctcctggacggcggcaacaagctgatgatcggcgggttcggcaacccc
gggatctgcgacaaccaggtggccacgggcgacacgcgcatattcttcctcaaccctgct
ctggaggccatggggccggaacacaagaacgaactcatgctcaactcgagtctgatgagg
attacccttcgcaacctggaggacgtagagcactgcgtagaagcccacaaatatataaat
gcagacaagcctcctcacttcacaccgccccagcctcctgacagctgcaaagggatgctg
tgtggcttcggcgctgtgtgtgagtttgaccaagccgacccggcccacgctaagtgtgtt
tgcaagagagcggactgcccgtccttggtggcgcccgtgtgcggctcggattcctccacc
tactccaacgagtgcgagctggagaaagctcagtgcaacacgcagagacgcatcaaggtg
ctgcgcaaggggccctgctctctcaaggacccctgcaccgaggtggcctgcagctacggc
agcacctgcatccagtcgtcggacggcctgtcggcgaaatgcatgtgccccctgggctgc
gagggcaagcgcgagcagacggtgtgcggcagcgacggagaggactaccgcaacgagtgc
ctgctccaccggcacgcctgcaagaaccagaagaacatacgggtgcagtacctggggccc
tgcgacctgtgcaaagagaacgagaacaacctgaacacgatgtgccgggtgcggactctc
acccgccagaccatcgtcttccggcccccggagatgtgccccgtggccaacgagccgctg
tgcgccagcgacggtcagacctacagcagcgagtgcgccatggacgccacgggattgcag
aagggcatcaagctgaggaagatccacgcgggaccgtgcaaacggctcgagcgctgtcag
gaggcgtgccccttcaacggcgtgtgcgtggtggagcagcagagcgcccgctgctcctgc
gaacccatcgagtgtgacggcacctacaagcccgtctgcggcagggacggccgcacctac
accaacgactgcgcccggcgcagggccgagtgcctgggcaggctgctcatcgccatcaag
cacccggggccctgtgatctcagcataccgagcccctgcctgggtaaggagtgcgatcac
ggggcggtgtgcgtggtcaagaacggcgagccggtgtgcgagtgccccgaggcgtgcccc
cagacctccgaccccgtgtgcgggtccgacggccacagctacggcagcccctgcgagatg
cgggccatgggttgtgccctgcagagggccattcagatccaacacaaagggccctgtgat
gaggcttgtgccaactgctccttcggggcgatctgcgacgcgcagagcgggcagtgtgtg
tgcgcgacggagtgcgtggagtcccaccagcccgtgtgcggcagcgacggcagcacctac
aacagcgagtgtgagctgcacgtgcgggcctgcaaacagcagacggacctccgcgtggtc
agccagggagagtgcaaaacatgcggcagcacagtttgtgcctggggggccatctgcgtc
aagaacaagtgcgagtgccagcagtgctctggcgagggccttgccctggtgtgcgggagc
gatggcgtcacctacaaaaacgagtgtgaactccgcacgtcctcctgcatgcagaagact
caaattgatgtggcgaaacccggcagctgtgacgaagactgtggctcaggggggtcgggc
tcaggcgcggagagctgtgaacaggaccgctgtcgcatgttcgggggctcgtgggacgag
gacgcggaggacgaccgctgcgtctgtgacttctcctgtcaaagtgtgcctctcaacacg
gtttgtggctcagatgggaaaaattacagcaacgagtgccagctgaagaaggccagatgt
gagaaacaagagcacttgatgactcagaatcagggatcctgtgcagcgatctcggcgaca
tctccccctgcgccgacgcccccccagcactgcagtcactctgtgtacggctgctgccac
gacaacgtgacggctgccttgggagtcggactggctggatgtcccagcacctgtcagtgt
aacgtccacggctcctacaaaggcacgtgtgacccggcctcggggcagtgctcctgtaag
ccgggcgtcgggggacagaagtgcgaccgctgcgagccgggcttctggaacttccgtggc
attgtgacggagaacatgagcggctgcacaccgtgtaactgcgacgccacaggctcggtc
cgggacgactgcgagcagatgtcgggtctgtgctcctgcaagacgggagtgaagggcatg
aagtgcaacgtgtgtccagatggaagcaagatgggcacgaatggctgtggcgaagctccc
gaggccccgggttcatgcgacaagttggtgtgcaaatttggagccacttgcaaagaggtg
aacggccaggcccactgcgagtgcccgccgcccgactgcgatgaccagaacaaaacccag
gtgtgcggctcaaacggggagacctacgccgaccagtgccagctgaggaccatcgcctgc
aggctgagggaggacatcgccgtgcaacactttggacagtgcacagataccatctctgag
ccggcagagcgacccacccccaaaccccccgccaccaccaccgccgccgccaccaccacc
accccggctccattcctcccaaaccaggtgttcgccctgccgcctccgcggacgaaagag
ccggagaccccccggcggcccccgcccaccgcccactcctccaccctcatgcacaaccgg
gcaaagcccaaccaaaccatcccaaccgagccgcggcgggccacccccgcccactcctcc
cgccgaatcccggtttcctccggcagtgccatgtcgtccgagggctcgggcagcggggag
ccaagcggggacgaccagaccgaggaggaggaggaggaggagcaggaggaggaagcaggt
agcggcatcccaacggaggccagtggagcagaggagacagtcggttccacgctggccagc
accactgcacccaccgccgaggaacgctcgtcctgtgacaacacagagttcggctgctgc
cccgacggcaagacgccgtccagcactccggagggcgccaactgcccctccaccatgagg
ttcagcggtttcctgcacttggaccaagtggagggccaggagatcttctacacccgggag
atggaggaccccaaatcggagctgtttggagagacggcgcggagcatagagggggctctc
aacgagttgtttaggaagtcagcggcgcacaaagacttcatgagcgtccgtgtccggaac
ctggcccccagcaactccatcctggcctttgtggaggcccacttcaaaccagatacgaga
ttgacggtggaggacatcgaaggagccctgctgaaacagctcaaggcctccagagagagc
ggcatcgccgtgaagaagcccgaggacgagaacatccgcttcaccaattatggcctctcc
tccgtccccttcttcaccaccacttccaccaccaccacggcgtcagtcaccacagctgct
cccgccaccaccaccaccaccaccactacagccaccccctccacaactaccaggcctccg
ccgacctccatgtacatcacccgtcgcccgcccggcaccacccgcaggcccaacagcggt
aggcgtaccaccaccaccaccacctccgcaccggtcaccacaccagtaccgaccaccacc
accaccaccaccacagcaatcacctccaccgagccccacccggcgaccactgcggctcac
agcagggggcggccctcccacaggccggccaagccctgcgcctcccacccgtgcctccac
gggggcacctgcgaggaggagggcaacgacttcagctgccagtgccccgccggccgagga
ggctccgtgtgcgagaaggtgatcagatacttcatcccgtccttcgggggccagtcgtac
ctggcgttcccgaccatgagcgcctaccacacggtccgcatcgccatggagttcagagcg
tccgagatgaccggcgtgctgctctacaacggccagacgggcaagaaggacttcatctct
ctggctctggtcaacggcaaggtggagctcaggttcaacacgggttcgggcacaggcacg
gtggtcagcaaagtgcaagtccatcagggccgctggcaccagctggtgttgacccgcaac
cggcgcagcgccatgctgagcgtggacaacgagcctcacatcgagggcgagagcccgcaa
ggcaccgacggcctgaacctcgacaccgacctgttcgtcggcggggtgcccgaggacatt
aagcaggacgtgagggaaaggacagcggtggccacgggactagtgggctgcatccgcatg
ctggatgtcaacaaccggaggctcaacctgcaggagagcgggggcgacagcatgtacggc
agcggcgtgggcgaatgcggcaacaacccctgccagccaaatccctgcaagaacggcgct
gcgtgccaggtcaaggaggcggagatgttccactgcaagtgcagcaaggggttctggggt
ccaacgtgtgctgacgtccatgacccctgcgagcccaacacgtgccactcgtcctcccgg
tgccaggcgctgcctgagggaggctacaaatgcgagtgtcccatggggcgtgaagggagg
cactgcgagacagtggctgagaggagaggggcttacatgccgctattcaacggggactct
tacctggagctgaaggggctccatctctacgggcaagatctgcggcaaaaggtgagcatg
acagtggtcctcatggccaacgactccaacggcttgatcttctacaacggccaaaaatcg
gacgggaggggagacttcatctctctgtccctcaacgatggcttcctggagttccgctac
gacctgggaaaggggcccgccaccatcaggagtttgaaaaagatgcagctgaacgtgtgg
aacaccatcaacctggagcgctccaaccgcaaaggagagatcacggtgaacaggaaggac
cctgtccgcggggaggcgccgaaatcacgcaagaacctgcacatagatcttaacctgaaa
gagtctctttttgttggcggagctcccgattacagccgactagcaagagtggcggctctc
acggagggcttcaggggaacgatccaagagatcatcctcatgggtaaccccatcctcagg
gaggagaacgccctgcgctccagcagcgtggccatgttccaggaccacccgtgctcccag
gagccctgccacaacggcggcatctgcaagcccacgctgcaaacctacgagtgcctctgc
ctccacgggttcaggggggagcgctgtcagagcaccgtctacgagaaggccgccggagag
cccgaggccattgcctttgacgggcggacgttcatcgagtaccacaacgccgtcacgaag
agccaactgaccaatgagatcccagatcccgagtctctggagaacccatctgaccagagt
gagaaggctctgctggtgaacaagtttgagctgagcatccggacggagaccacccagggc
ctggtgctgtggagcgggaagggcgtggagcgctccgactacatcgccctggccatcgtg
gacggacacgtccagatgacctacgacctcggctccaagccggtggtgctgcgctcctcg
gtgcgggtcgacactaaccgctggatacgcatcaaggccagcagggcacttagagacggc
tccctacaggtcggcaacgaggcggccgtaacggggtcgtcgcctttggcagcaacgcag
ctggacacggacggagcgctgtggttgggtggtctggaggagctggcggtggcccggcgg
ttgcccaaggcctacagcaccagctttgtcggctgcatcaaggatgtggtggtggacggc
gtggagctccacctggtggaagacgccttgaacagcccccaaatattacactgctccgcc
gccaaataa
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