Pungitius pungitius (ninespine stickleback): 119227931
Help
Entry
119227931 CDS
T07626
Name
(RefSeq) thrombospondin-1-like isoform X1
KO
K16857
thrombospondin 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04115
p53 signaling pathway
ppug04145
Phagosome
ppug04148
Efferocytosis
ppug04350
TGF-beta signaling pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119227931
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119227931
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119227931
04148 Efferocytosis
119227931
09143 Cell growth and death
04115 p53 signaling pathway
119227931
09144 Cellular community - eukaryotes
04510 Focal adhesion
119227931
09142 Cell motility
04820 Cytoskeleton in muscle cells
119227931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119227931
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119227931
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Phagocytosis
Opsonins
119227931
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119227931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
EGF_CA
cEGF
TSP1_ADAMTS
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
119227931
NCBI-ProteinID:
XP_037343031
LinkDB
All DBs
Position
14:complement(4068000..4076452)
Genome browser
AA seq
1170 aa
AA seq
DB search
MMLRGICLLLMLWSCEGARLAESRDDNSVYDLFEMVRVNKRHNGVTLVKGADPHSPAYKV
LNADLIPPIPDSYLRDLLDSIQAERGFLLLVNLKQFKKSRGSLLTIEKKDGSGSIFEIIS
NGKANTLDVVYSTPSQQQVVSIEDADLATGHWKNITLFVQDDRVQLFVGCEEINVSEMDV
PISKVLSQELADVARLRIGKGAVRDKFMGVLQNFRFVFGTPLDAVLRNKGCQSGATLTDV
LTLDNPVNGSSPAIRTDYTGHRTKDPQAVCGFSCEDIAGMFKELKGLGVVVKQLSNELRK
VSEDSTLLKNQMNIPSGICIHNGFEHKDKDEWTVDSCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGPITEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQTR
DCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGSDCQGEGRQT
EICQKSPCPVNGGWGPWSPWDTCTVTCGGGVQNRKRLCSDPVPKYGGKDCVGDASVSQVC
NKQDCPVDGCLSSPCFPGAKCASFPDGSFRCGRCPPGFSGNGVACRDIDECKAVPDACHT
HNGVHRCENTEPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHDCHRNA
NCIYLGVFSESMYRCECKPGYAGNGRICGEDSDLDGWPNVDLVCVENATYHCKKDNCPNL
PNSGQEDHDKDGLGDECDHDDDNDGISDDRDNCPRVYNPAQYDADRDDIGDSCDNCVYEA
NTDQTDTDNNGEGDACAVDIDGDGILNGNDNCAYVYNVDQRDTDRDRVGDHCDNCPLEHN
PDQLDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGNGRGDVCKDDFDQDNVLDIHDVCPENFAISETDFRRFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFVNTDRDDD
YAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKSGLIRVVMYEGKRIMADSGNIYDK
TYAGGRLGLYVFSQEMVYFSDLKYECRGKR
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgcggggcatctgtttgctgttgatgctttggagctgtgaaggagccagattg
gcagagagtcgagacgataacagtgtgtatgacctatttgaaatggtccgggtaaacaag
agacacaacggagtgactttggtcaaaggtgccgacccccacagccctgcatacaaggtc
ctcaacgcagacctgatccccccaatcccagacagctacctcagggacctgctggactcc
atccaggccgagaggggctttctcctcctggtcaacctgaagcagttcaagaagagccgg
ggcagccttttgaccatcgagaagaaggacggctccggatccattttcgagatcatctcc
aacggcaaggcgaacactctggacgtggtctactccactccgagccagcagcaggtcgtg
tccatcgaggatgccgacttggccactggacactggaagaacatcacactgtttgtccag
gatgaccgggtgcagctctttgtcggctgtgaggagatcaacgtgtcggagatggatgtg
ccgatctccaaagtgctgtcacaggagttggcggacgttgccaggctcagaatcggaaaa
ggagccgtgagggacaaattcatgggagtccttcaaaacttccgctttgtctttgggacc
cctctggatgctgtactgagaaataagggatgccagagtggagccaccttaactgatgtc
ctgaccctggacaacccggtcaacggctcaagcccagccattaggaccgattacactggc
cacagaaccaaagatccgcaggctgtctgcggcttctcctgtgaggacatcgccggaatg
ttcaaggagctcaagggactcggcgtcgtcgttaaacagctgtcgaatgaactgcgcaaa
gtgtctgaggacagcacgctgctgaaaaatcaaatgaacatccccagtggaatttgcatc
cacaacggattcgagcacaaggacaaagatgaatggaccgtggatagctgcaccgagtgc
acctgccagaactctgccaccgtgtgccgcaaaatctcctgccctctgatgccgtgcgct
aacgccaccgtgccagatggagagtgctgcccccgctgcggaccaattacagaggatggt
tggtccccctggtccgactggactcattgttcggtgacttgtggccggggcatccagcag
cgcgggcgctcctgtgaccgcatcaacagcaactgcgagggcacctccgtccagacccgt
gactgctacccccaggaatgcgacaaacgcttcaaacaggacggcggttggagccactgg
tctccctggtcttcgtgctccgtgacctgcggcgagggcgtcatcacccggatacgcctc
tgcaactctcccacgccgcagatggggggcagcgactgccagggggaaggccgtcaaacg
gaaatctgccaaaagtcaccctgccctgtcaatggaggttggggaccttggtcaccatgg
gacacatgcactgttacctgtggcggaggagtccagaaccgcaaacgtctctgctccgac
cctgtccccaaatatggaggaaaggactgcgttggggacgcctctgtgtcccaagtgtgc
aacaaacaggactgccctgttgatggttgtctctccagtccttgcttccccggagcaaag
tgcgccagcttccccgacggctctttcaggtgtggcaggtgtccacctggcttctccggg
aacggcgtggcctgcagagacatcgacgaatgcaaagcggtgcccgatgcttgtcacaca
cacaacggagtccatcgctgtgagaacacggagcccggctacaactgcctcccctgccct
gcgcgcttctccggtcctcagcccttcggaagaggagtggaacaggcgaccgctaaaaaa
caggtctgcaaaccccgtaacccctgccaagacgggagccacgactgccataggaatgca
aactgcatctacttgggcgtcttctccgagtccatgtaccgctgcgagtgcaagccaggg
tacgctgggaacggacgcatttgcggcgaggacagtgaccttgacggatggcccaacgtt
gacctggtttgcgtggagaacgccacctaccactgcaagaaggataactgccccaacctt
cccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgtgaccacgat
gatgacaacgatgggatctccgatgatagggacaactgcccaagagtgtacaaccctgcg
cagtatgacgcagacagagacgacattggcgacagctgtgacaactgcgtgtacgaggcc
aacactgaccaaacggacactgacaacaatggcgagggcgatgcctgcgctgttgacatc
gatggtgatggcattctgaacgggaacgacaactgcgcgtatgtgtacaacgtggatcag
agagacaccgacagggaccgggtgggagatcactgcgacaactgccctctggagcacaac
cccgaccagctcgactctgactcagatcgcgtaggagacaagtgcgacaacaaccaggac
attgacgaggacggtcaccagaacaacttggacaactgcccctacatacccaatgccaac
caggcagaccacgacaaggacggcaagggtgacgcctgcgaccacgacgacgacaacgac
ggcatccccgacgacaaggacaactgcaggctggcgttcaaccccgatcagctggactct
gatggcaatggccgtggcgatgtgtgcaaggacgattttgaccaagacaacgttctggac
atccacgacgtgtgcccggagaactttgccatcagtgaaacagacttccgcagattccaa
atggttcctctggaccccaagggcacgtcccagattgaccccaactgggtggtccggcat
cagggcaaagagttggtgcagaccgtcaactgcgacccgggcattgctgtcggttacgac
gagttcagcgcggtggacttcagtggaacgttcttcgtcaacacagacagagatgacgac
tacgccggcttcgtgttcggctaccagtcgagctcccgcttctacacagtgatgtggaaa
cagatcacacagacctactggtcccacacgcccacaagagctcaaggctactcgggcctg
tcaatcaaagtggtcaactccaccactgggcccggtgagcatctgaggaacgccctgtgg
cacaccggagacactgcaggacaggttcgcactctgtggcacgaccccaagaacattggc
tggaaggacttcactgcctacagatggcatctgacccacaggcccaagtctggacttatt
agagtggtcatgtatgaaggcaaaaggatcatggccgattctgggaacatctacgacaag
acgtacgccggtgggcgactagggttgtacgtcttctcccaggagatggtttacttctca
gacctcaaatacgaatgcagaggtaagcgctga
DBGET
integrated database retrieval system
