Pungitius pungitius (ninespine stickleback): 119229656
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Entry
119229656 CDS
T07626
Symbol
tardbpb
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119229656 (tardbpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119229656 (tardbpb)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
119229656 (tardbpb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RRM_11
Motif
Other DBs
NCBI-GeneID:
119229656
NCBI-ProteinID:
XP_037346154
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Position
8:20994968..20999344
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AA seq
403 aa
AA seq
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MAEVYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
VLHAPENGWANAVYVVNYPKDNKRKMEEIDASSAVKMKRGDMKTSDLIVLGLPWKTSEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYEAQEKVVSQRHMIDGRWCDCKLPN
SKQGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHGNRQFDRTTRFGNGFGAQAFGSSRSGLGGSSTNSS
MANFGSFSLNPAMMAAAQAALQSSWGMMGMLASQQQTSTSGSTSSGTSSSRDQSQSFSAG
NSNYGTSSASLGWGTGSNSATSGSGFSSGFGSSMESKSSGWGM
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagtatacattcgagtggcggaggaagaaaacgaggaaccgatggagataccg
tccgaggacgacggcaccgtcctgctttccaccgtggccgctcagttccccggggcgtgt
ggcctgcgcttcaggagccccgtgtcccagtgcatgcgaggggtgcgtctcgtggaagga
gtcctgcacgcaccagaaaacggatgggcgaatgcggtgtacgtagtgaactatccgaaa
gataacaaaagaaagatggaagaaattgacgcctcctctgctgtaaaaatgaagcgggga
gacatgaagacctctgatctgatcgttctgggtcttccgtggaaaacgagtgagcaggac
cttaaagactactttagcacatttggagaagtcatcatggttcaggttaaacgagacgcc
aagacgggaaactcaaaaggattcggctttgtgagattcacagagtatgaagcacaagaa
aaggtggtctcccaacggcacatgattgacgggagatggtgtgactgcaagctcccaaac
tcaaagcaaggtccagacgagcctttgaggagccggaaagtgtttgtaggccgttgcacg
gaggacatgaccactgacgacctacggcagttctttatgcagtatggggaggtcacagat
gtcttcatccccaagccattccgtgcttttgcctttgtcacgtttgcagacgatcaggtt
gcacaggccctttgtggagaggacctaataatcaaaggtgtcagtgtgcacatctcaaat
gctgagccaaaacatggcaacaggcagtttgatcgcacaacgcggtttggtaacgggttt
ggagctcaggcatttggtagcagtcgtagtgggttgggggggagcagcactaacagtagc
atggctaattttggctctttcagcctgaaccccgcgatgatggccgcggctcaggcggcg
ctgcagagtagctggggcatgatgggtatgctggcgagccagcagcagacgtccacctca
ggcagcacctccagtggaacgagttctagtcgggaccagagtcaatcgttcagtgcaggg
aacagcaactacggcaccagctcggccagtctcggctggggaacggggtcgaactctgcg
accagcggtagtgggttcagttcaggttttgggtccagtatggagtcaaagtcatctggg
tggggtatgtaa
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