Pogoniulus pusillus (red-fronted tinkerbird): 135175529
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Entry
135175529 CDS
T10504
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03450
Non-homologous end-joining
Brite
Enzymes [BR:
ppus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135175529 (LIG4)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135175529 (LIG4)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135175529
NCBI-ProteinID:
XP_063999841
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Position
5:34377695..34381952
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AA seq
911 aa
AA seq
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MASTPTSQPSKKTVASHVPFAHLCDTLERIQKSKSRPEKTKCFKDFLDSWRKFHEALHRK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDAAKLLNYRAPA
GLRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPSVSLS
DVSIMLFSAFKPMLAAIADVQQIEKQMNNQLFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDVKRMME
DSDLQTCFCVFDVLMVNDQKLGHEILSKRHEILSSIFTPVTGRIHIVNKKSARTRKDVID
ALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYRRKDPPC
NILCGTEKPEMYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTL
DMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRRTVSKVKKIIGIAEQFKAPDLSTVNKVS
NVFEDVEFCVMTGTVKYTKSELESRIAEFGGSVVQNPGPETYCVIAGAENVRVKNIIASN
KYDVVRAEWLLQCFQSKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLKE
VFSRTKDSKVMPLDVIAELEERYSWNSCQLNIFRGNTIYVDYYAVVNEPRTKIHGTTLSI
RALELRFYGAKLVSRLEEGVSHVVTGEDHSRVKDMKALRRTFGKKFKIVSELWVTESVEG
GVPKNENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctacttcccagccctcaaaaaaaacagtggcctctcacgtgcctttt
gcacatctgtgtgacactctggagcgaatacagaaaagtaaatctcgtccagagaaaaca
aagtgtttcaaggattttctggattcctggagaaagttccatgaagctcttcatcgcaaa
gagaaagacgtgacagattctttttacccagctatgcgacttattcttccacagttggaa
agagaaaggatggcatacggaattaaagaaactatgcttgcaaagctatatattgaactg
cttaatttaccaagagatggaaaagatgctgcaaagcttttaaattacagagcacctgct
ggcttacgtggagatgctggagattttgcaatgatcgcttactttgtgttaaaacctagg
agcccaaaacaaggcagattgacaatagagcaagtcaatgaacacttagatgcaatagct
aataataatgctgctaaaaacaaaggtctactaaagaaaagtcttctgcagttaattacc
cagagcacagcactggaacaaaaatggctcatccggatgattataaaggatctaaagctc
ggtgttagtcagcaaacgatattttccattttccatcctgatgctgttgaattgcacaac
gtcacaaccgatttggaaaaggtttgcaggcaactgcatgatccttctgtctcactcagt
gatgtttctatcatgttgttttctgcctttaaaccgatgcttgctgccattgctgatgtc
caacaaattgagaaacaaatgaataaccagctgttctacatagaaactaagctggatggt
gaacgtatgcagatgcacaaagatggagacgtgtataaatatttttcccgcaatgggttt
gactacacccagcagtttggtgcttccccccttgatggttcgttaacaccttttattcat
aatgtatttaagagcaatatacaaaactgcattcttgatggtgaaatgatggcatacaat
cctgagacacaaacctttatgcagaaaggaaacaaatttgatgtaaaaagaatgatggag
gactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaacgatcagaag
ttggggcatgaaatactaagcaaaagacatgaaattttaagtagcatatttaccccagta
acaggcaggatacacattgtaaataaaaaaagtgccagaacaagaaaagatgtaatcgat
gctttaaacgaagcaatagataatagagaggaaggcattatggtgaaagatcccatgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtcaat
ggactgatggatgagctagaccttttaattgttggtggttactgggggaagggctcacgt
ggtggaatgatgtctcattttctgtgtgctattgcagagacacctcccccaaatgaaaaa
cctaccattttccattctatttgtcgcgttggctctggctatactatgaaggagttgtat
gacctaggtttgaaactggctaaacactggaagccctatcgtaggaaggaccctccctgt
aacattttgtgtggaactgagaaacctgaaatgtatattgaaccttgcaactctgtcata
gttcaggtcaaggcagccgagattgttaacagtgacatgtacaaaactgactgcactttg
agattccctcgaattgagaagataagagaggataaagaatggtatgagtgcatgacttta
gacatgttagaagatcttagaagcaaagcagaagggaagctggcatctaagcaccttcat
atagatgagtatgatgagccacaagagaaaaaaaggagaactgtatcaaaggtgaagaag
attattggaatagctgaacaatttaaagctcctgatctctctactgtaaacaaggtttca
aatgtatttgaagatgttgagttttgtgttatgactggaacagtaaaatacacaaaatct
gaactagaaagcagaatagctgaatttggtggcagcgtggtacagaacccagggcccgag
acttattgtgtcatcgcaggagctgagaatgtcagagtgaagaatatcattgcttccaac
aaatatgatgtggtgagggcagagtggcttcttcagtgttttcagtctaaaatgctggtg
ccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacactttgctcgt
gagtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaaggaa
gtgttctcaagaacaaaagacagtaaggtgatgcctttggatgtgattgcagagttagaa
gaacgctattcatggaacagctgtcagctcaatatattcagaggaaacactatttatgtg
gactattatgctgtggttaatgagcccagaaccaaaatccatggaacaacactatcaatt
agagctttggagctccgtttttatggtgcaaaactagtttctcgccttgaagagggtgtc
tcccatgttgttacaggagaagatcattcccgagttaaagacatgaaagcactcaggaga
acatttgggaagaaatttaaaattgtatctgagctctgggtaacagagtcagtggaggga
ggagttccaaagaatgaaaatcagtatttaatataa
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