Pogoniulus pusillus (red-fronted tinkerbird): 135178926
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Entry
135178926 CDS
T10504
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppus03036
]
135178926 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ppus03400
]
135178926 (SMCHD1)
Chromosome and associated proteins [BR:
ppus03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
135178926 (SMCHD1)
DNA repair and recombination proteins [BR:
ppus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
135178926 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
Ig_SMCHD1_7th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
135178926
NCBI-ProteinID:
XP_064006414
LinkDB
All DBs
Position
10:complement(40189710..40232584)
Genome browser
AA seq
2027 aa
AA seq
DB search
MAADAAAGGSRGGRRSALLTPGGSGDRTVFLFDRRREQADREEKVLSYGTNNYRAFRSAV
CQTFGIADEEAFVITTTNRKEITEDNFSEVVQDGLTLYLLQSVDQMLLSATKERIDFLPH
YDTLVKSGMYEYYASEGHNPLPFALAELIDNSLSATSHNTGIRSIQIKLLFDESQGKPAV
AVMDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNRESIYSGYIRNRKPSDSSHITS
DDEKFLHNLILEERGKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGN
ESSAAAKDCSPFNNIDIQIAMFEKGKVPKLVNLREIRDDMQTLYISTAADSFEFKALVEG
EGIVEGIIRYHPFLYDRETYPDDPCFPSKPVEEDSDEECFIVQKAARGKRPIFECFWNGR
LIPYTSVDDFEWCAPPKKRGLTPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKN
TLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTIFKGVTPRTDLPSKRMQSPWTV
YGAIEWDGRTFRSGQLVKTVKTLPIFYGTIEKFFLYGHHDGDIFATGGEVQIALEPQALY
AEMKTIPISKLDRTVCDSVIKKYIEDEMARLPDKLSVTWPEGDELLPNDTRFAGTPIGAL
RIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKK
MENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKVFRFTIIEGKAEKFSVGLLELPCRVG
VPFNIPLELQDEFGHTTQLLPDLKPVLEVSGLTLHYREVTTGAKSMIKGVTVKGSINSCQ
GKNFNMKVTLPGLKEDTQTLKIRVQPGPPHQLRVKPVSEVLKIENGTAFPFQVEVLDEAG
NITAQPRLVVHCKFLGTSNLPVYSVDCSNGGTNILTGPVIQVQNIKKDKILKARIELLNC
KEVPAVEKIIKLLPSSHVARLQILSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEGD
REIHLTPAMADKIKVNWTPKINKEQLMQGLLPNVKVPTSVKDVRYCLITYLDDHVSLESA
FTVRPIADEPKHIKCKLKGPNTLQLGEELPGEVDIMITDQYGNQVQTVTSSCINSLGISA
PGLDKSNLKITWQGSSLIMRVKGIRFGSCQLGTKELCFAWREFSDFIRVTLTAGPPARLQ
FLDWPELEKPMAVIDGRQLQKPLVVQMCDQWGNPIPEPNVRIGLTKSSNLKVGSSSQQLK
TDDSGRANLGVLCIYAPRGEHTLQVRAFHHKATLDAPLITLNVLPDPEKPVYVKVKYDKD
ASFPAGGTFPDFMVSVLSEEENIIKNLSSARVTMNMWEAQGSVAKAGTEVTTYSCSKVKE
DKEDGFFYFRDKMIPERVATYCIQFTFAVDKLNTLSSDQILVEVVPNAPVRLAPDSLPAT
PAVSNVRTLASRTLVKDLHLHLMDEYNNHTGTELGGRVLAKIKSPGEEDVEVPQFQGKVE
FPLERGSARISLVLAENSPGRDSTEYVLVFEPEVPALKQPLEPYHLSFMFYNDFKKQQQM
AALTKERDQLSQSIGVYRNWFDTHSQLLTELKCQVKEAETRETHLKNELRKHQIEVPQTN
TLQYVDSLIKQKLLDQEGLRKQPRRTCTLPNYPKGNPDVLGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLSTQAARAIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKVCFKP
VGNPVFARDLLSFPDSVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKLTHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKLYSAFSAQIDLLQQYRAAVVKLDHVN
KDLDLHLQSLQTPEAQKKKQELAEQEKSLKLIEQKLGMTSSDRVSGSLLQPLPLELSDSP
SPAKRMRRETAKKLYSSEEWVSSPSKKQPPLLQLCPAELNGTRKRKA
NT seq
6084 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggacgcggcggcgggaggcagccgcggagggcgcaggtcggcgctgctgacc
cccggcggtagcggggaccgcaccgtgtttctcttcgatcggcggcgggaacaggcggac
cgtgaggagaaagtgctgagctacggcacgaacaactaccgtgccttccgcagcgccgtc
tgccagacctttggcatagctgatgaggaagcctttgttatcaccaccaccaacaggaag
gaaattacagaagacaacttcagtgaggtggtgcaggatgggctgacgctgtacctgctg
cagagcgtggaccagatgctgctgtcggccaccaaggagcgcatcgacttcctgccgcac
tacgacacgctggtgaagagtggcatgtacgagtactatgccagcgaggggcacaacccc
ctgccctttgccctggcagagctgattgacaactccctgtcggccacctcccacaacacc
ggcatcaggagcatccagatcaagctgctcttcgatgagtcccaagggaagccagcggtg
gctgtgatggacaatggcagggggatgacctctaagcagctcaacaattgggccgtgtac
agactgtccaagttcaccaggcagggggactttgagagcgaccactccggctacgtccgc
ccggtgccagtgccgcgcagcctcaacagcgacatctcctactttggggtcgggggcaag
caggcagtgttcttcgtggggcagtctgccaggatgatcagcaagcctgcagactctcaa
gatgttcacgagcttgtcctgtccaaagaggactttgagaagaaggagaagaacagagaa
tcgatctacagcggctacatccgaaacaggaagccctctgactcctctcacatcacgagt
gatgacgaaaagtttctccataacctgatcctagaggagaggggcaaagagagcttcaca
gccgttgtcatcacaggggtccagcctgaccacatgcagtacctgaagaactacttccac
ctctggacacggcagctggcccacatctaccactactacatccacgggcccaagggcaac
gagagcagcgctgccgccaaggactgcagccccttcaacaacatcgacattcagatcgcc
atgtttgagaagggcaaggtgcccaagctggtgaacctgcgggagatcagggacgacatg
cagaccctctacataagcaccgccgccgacagcttcgagttcaaggcgctggtggagggg
gagggcatcgtggagggcatcatccgctaccaccccttcctctacgacagggagacttac
cctgatgatccctgcttcccgtccaagccagtggaggaggatagcgatgaggagtgcttc
atcgtgcagaaggcagcccgagggaagaggcccatctttgagtgcttctggaacggaagg
ctaatcccctacacctctgtagacgacttcgagtggtgtgccccgcccaagaagagaggc
ctgacgcccatcgagtgctacaacaggatctcaggagccctcttcaccaacgacaagttc
caggtcagcaccaacaagctgaccttcatggacctggagctgaagctgaaggacaagaac
actctgttcaccaggatcttcaacggccaggagcagcgcatgaagatcgacagggagttt
gccctgtggctgaaggactgccacgagaagtacgacaagcagatcaagttcaccatcttc
aagggcgtcaccccccgcacggatctgccctccaagaggatgcagagcccctggacagtc
tacggggccatagagtgggacggcagaaccttcaggagtgggcagctggtgaagacggtg
aagactctgccaatattctatgggaccattgagaaattcttcctctatggccaccacgat
ggggacatttttgccactggaggagaggttcagattgctttggagcctcaggccttgtat
gccgagatgaagaccatccccatctccaaactggacaggaccgtgtgtgacagtgtcatt
aagaagtacatcgaggatgagatggcaaggctccctgacaagctgtcagtgacgtggcct
gaaggagatgagctgttgccaaacgacaccagatttgctggcacaccgataggagcactg
aggatagaaatcctcaacaagaaaggagaagcaatgcaaaagctcccggggacgagccat
ggagggtcaaagaaacttcttgtggagctgaaggttatcttacactcacccactggcaac
aaagaaatcatctcccacatcagccagcacgggggcaagtggccctactggtttaaaaaa
atggagaacctgcagaagttgggcaactacaccctgaagctgcaggtggtgctgaacgag
agcaacgccgacacctacgcgggcaggccgctgccctccaaagtcttcaggttcaccatt
atagagggcaaagcagagaagttttctgtcggtctcctggagctgccctgtcgggttggg
gtccccttcaacatccccctggagctgcaggatgagtttggccacaccacgcagctcctg
cctgaccttaaaccagtccttgaagtcagtgggctgaccttgcactaccgagaagtgacc
acaggagccaagagcatgatcaagggggtcactgtcaaaggctctataaacagctgccag
ggcaagaacttcaacatgaaggttactctgcctggtttgaaggaagacactcagaccctt
aagatcagagtgcagcctggtcccccgcaccagctgcgggtgaagcccgtgtcggaggtg
ctgaagatcgagaacggcacagccttccccttccaggtggaggtgctggacgaggccggg
aacatcaccgcccagccgcgcctcgtcgtgcactgcaagttcctaggcacctccaacctg
cctgtgtactcggtggactgcagcaacggcggcaccaacatcctgacggggcctgtcata
caggtgcagaacatcaagaaggacaagatcctgaaagccaggatcgagctgctgaactgt
aaggaggtgccagcagtggagaagatcatcaagctgctgcccagcagccacgtggccagg
ctgcagatcctgagcatggatgggcagaaagccatccagatcaagcaccaggatgagatc
aactgggtggctggggatgtgatgcacaacctcatcttccagatgtacgacgagggggac
agggagatccacctgactccagccatggcagacaagatcaaggtgaactggacccccaaa
attaacaaagagcagctgatgcagggcctgctgcccaacgtgaaggtgcccacctcggtg
aaggacgtgcggtactgcctgatcacctacctggacgaccacgtctctctggagagcgcc
ttcaccgtcaggcccattgctgacgaacccaagcacatcaagtgtaagttaaaaggacca
aacaccctgcagctgggtgaggagctgccaggagaagttgacatcatgatcaccgatcag
tatggcaaccaggtccagacagtgacatcttcatgcatcaactcccttgggatttctgca
cctggactggataaatccaacctgaagattacttggcagggcagctctctgatcatgcgg
gtcaagggcatccggttcggcagctgccagctgggcaccaaggagctctgctttgcctgg
agagagttctccgacttcatcagggtcaccctgactgcagggccccctgcccggctgcag
ttcctcgactggcccgagctggagaagcccatggcggtgatcgacggcaggcagctgcag
aagcctctcgtggtgcagatgtgtgaccagtggggaaacccaatccccgagcccaacgtc
aggatcggcctcaccaagagcagcaacctcaaggttggctcctccagccagcagctaaag
accgatgacagcggcagggccaacctgggggtgttgtgcatctatgcacccaggggggag
cacaccttgcaggtgagagccttccaccacaaagccaccttagatgctcctctcatcacc
ttgaacgtcctgcctgaccccgagaagcctgtctatgtgaaggttaaatatgacaaggat
gcctctttcccagcaggaggaaccttccctgacttcatggtcagtgtgctctcggaggag
gagaacatcatcaagaacctcagctctgcccgggtcaccatgaacatgtgggaggcacag
ggcagcgtggccaaggctggcaccgaggtgacgacctacagctgcagtaaggtgaaggag
gacaaggaggatggcttcttctacttcagggataaaatgattccagagagagttgccact
tactgcatccagtttaccttcgcagtggacaagctgaataccctcagcagtgaccagatc
ctggtggaggttgtccctaacgcccctgtccgcctggcccccgactccttgccagccacc
ccagcagtctccaacgtccgcaccctcgccagccgtacgctggtcaaggacctgcacctc
cacctgatggatgagtacaacaaccacactggcaccgagctggggggcagagtcctggcc
aagatcaagagccctggggaggaggacgttgaggtgccccagttccagggcaaggtggag
ttccccctggagaggggctcggcacgcatcagcctggtgctggccgagaacagccctgga
agggacagcactgagtacgtcctggtgtttgagccagaagtgccggcgctgaagcagcct
ctggagccctaccacctgtccttcatgttctacaacgatttcaagaagcagcagcagatg
gcagcgctgaccaaggagagggatcagttgtcccagtccatcggggtctacaggaactgg
tttgacacccacagccagctgctgactgagctcaaatgtcaggttaaagaagctgaaaca
agagaaactcacctgaaaaacgagctgaggaaacaccagattgaagtgccacagaccaac
acactccagtatgtggattctctgatcaaacaaaagctgttggaccaagaggggttgagg
aagcagcccaggagaacctgtaccctcccaaactacccaaaaggcaacccggatgtgcta
ggcaagatcgcccacctggcccagatcgaggacaatgaggctgccaaggtgatctcctgg
cacctggccagcgacatggactgcgtggtgacgctgagcacgcaggctgcccgtgccatc
ttcgacgagacccagggccgccagcaggtgctgcccctcgactccatctacaagaagacg
ctgccagactggaacaggcccctgccccacctgcggaacgggaaggtctgcttcaagccc
gtgggcaaccctgtgtttgccagagacctgctgagcttccccgacagcgtggagcactgc
cagacagtgtttgggatgctcctgggggacaccattatcatagacaacctggatgctgcc
aaccactacaggaaggaggtggtgaagctgacccactgccccacgctgctgacccgcgag
ggcgaccgcatccgcagcaacggcaagttcggggggctgcagaacaaggccccccccatg
gacaagctccggggcatggtcttcggcgcccccatcccgaagctctactcggccttctcc
gcacagatcgacctccttcagcagtaccgagcagcagtggtcaagctggaccatgtcaac
aaggacttggacttgcatctgcagtccctgcagactcctgaagcacagaagaagaagcag
gagctcgctgagcaggagaagagcctcaagctgatagagcagaagctgggcatgacctca
tcagaccgagtctcagggtccctgctgcagcccctcccgctggagctgtctgacagcccc
agccctgccaagaggatgaggagagagacagccaagaagctctacagctcggaggaatgg
gtctcctctccctccaagaagcagcccccgctgctgcagctgtgcccggcggagctcaac
gggacgcgcaagaggaaggcctag
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integrated database retrieval system
