Pogoniulus pusillus (red-fronted tinkerbird): 135188895
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Entry
135188895 CDS
T10504
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
135188895 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppus03000
]
135188895 (KDM2B)
04121 Ubiquitin system [BR:
ppus04121
]
135188895 (KDM2B)
03036 Chromosome and associated proteins [BR:
ppus03036
]
135188895 (KDM2B)
Enzymes [BR:
ppus01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
135188895 (KDM2B)
Transcription factors [BR:
ppus03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
135188895 (KDM2B)
Ubiquitin system [BR:
ppus04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
135188895 (KDM2B)
Chromosome and associated proteins [BR:
ppus03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
135188895 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
135188895 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
135188895
NCBI-ProteinID:
XP_064024723
LinkDB
All DBs
Position
30:complement(9898192..10021680)
Genome browser
AA seq
1268 aa
AA seq
DB search
MKLPQKMEAEKDSGRRLRSIGRRRYAESEDLSDVEEIVSIRSFNLEEKLKSKTYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVDT
QKGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKARQTDATNALSEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRQRSTDSYSSDSWLDMDEESCDAHIQEEKDDSVDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKINRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEK
PPEPTMRKRLKLGKEDKLFRKKRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDS
DQSRSSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANE
NHQPIKSEPESENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGIARPPP
SLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRV
CKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRL
PGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDN
RSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRD
SLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVE
EKLLQKLS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcccccaaaaaatggaggcagagaaagactctggaagaagattgcggtccatc
ggcagaaggcgatacgcggagagcgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaacgtaccacggggattttgtccat
gctatggacggaaaagattttactttcgagtatgtgcaaagagaagctctcagagttccc
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagacgtgaagctattagtgggaagccgacgcatagtggatgtgatggatgtggacact
cagaaaggggttgaaatgagcatgtctcaatttgtgaggtactacgaaaccccagaggcc
cagcgtgaaaagctctacaatgtcatcagcctggagttcagtcacacaaagctggagaac
atcgtcaagcgccccaatgtggtggacttagtcgactgggtggacaatatgtggccacag
catctgaaggcgagacagacggatgctaccaatgctctttcggagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcggtgtggtatcacgtttttcgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagacaacgcagcacagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatatccaggaggagaaggatgac
agtgtggacaagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcggaagggaaggagggtgcaggaagaaaacaaaaagccacagtaatgagatacctaaaa
agaactttgtctaatgagtcagatgacagtgtaaaatcaacgacccccacggactatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctagtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcatcgaagatccccaggctctccttgaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtggggcggcccaaagggaagctgggcact
gcttctgcagtgaagctcgcagctaatcggacaactgctggagcccgccggaggaggacg
cgatgccgcaagtgcgaggcctgcctgcggacggagtgcggcgagtgtcacttctgcaaa
gacatgaagaagtttgggggacccggcaggatgaaacagtcctgcatcatgaggcagtgt
atcgcaccagtgttgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagaa
gacaccgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcagatggtgtggtgaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccgggctcgctgctg
aaggaacagaaaattaatagagacaacaaggaagtaacagatgctgcaaaaaggaaaggg
gattgtgaggaaactcccaggaggaaatcagaggaacattccaaaaagactcaagttgac
tcaatactgaggagaaaatcagacgaagtgcatctgtggaggaaaaggaaattcgagaaa
cccccagaacccaccatgagaaagcggctaaaacttggaaaagaagacaaactcttcagg
aagaagcggcgatcgtggaaggctccggatgaccgaactgccatgatcaaacccctgcgg
cgcctgaagcaggagccagaggatgacctgccagaagcaccccccaggtccaaggatagc
gaccagtcgcggtccagctcgcccactgcaggtcccagcacggagggtgccgagcccagg
gacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataaagaactgagcaaa
gagctcagcaaggagcttaaccaggagatccaaaaaaccgagaacagccttgccaatgag
aatcaccagcccatcaagtctgaacctgagagcgagaacgaggaacccaagcgagctctg
aacaacagtgagagactccataggttcagcaaagggttgaacgggactccccgggagctg
aggcatcagctcatccccagcctgcggagcaccccgcggggaatcgcgcggccgccgccc
tcgctgtctcctcccaaatgcattcagatggagcggcatgtcatccggcctcctcccatc
agcccccctccggactcgctccccctggatgacggggcagcccacgtgatgcagagggaa
gtctggatggctgtctttagctacctcagtcatagggacttgtgcatctgtatgagagtt
tgcaagacctggaacagatggtgctgtgacaaaagattatggaccaaaatagatttaaac
cattgtaaatccatcactccacttatgcttagtggcattattaggagacagcctgtaacc
cttgaccttagctggacaaatatatctaaaaagcagctgagttggcttatcaacagactg
ccaggtcttcgagacctgctgttatcagggtgctcatggatagcagtgtcggcactttgt
agttccagttgtccattactccgaactctggatgtgcagtgggcagaaggactgaaagac
gcacaaatgagagacctcttgtcaccacccacagataacagaccaggtcagatcgacaac
cggagcaagctacggaacattgtggagctgcgcctggctggcctggatatcaccgatgcg
tctttgcggctgatcataaggcacatgcctctgctctccaaactcaatctcagttactgt
aaccacgtcacagatcagtctattaacctgctgaccgcggtcggaaccaccacgcgggat
tccttaacagaaattaatttatcagactgcaataaggttactgaccagtgcctgtcttac
ttcaaacgttgtggaaacatctgccagatcgacctgaggtactgcaagcaagtgacaaag
gaaggctgcgagcagttcatcgcagagatgtcagtaagtgttcagtttgggcaagtggaa
gaaaaacttctgcaaaaactgagttag
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integrated database retrieval system
