Pogoniulus pusillus (red-fronted tinkerbird): 135191893
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Entry
135191893 CDS
T10504
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135191893 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppus03041
]
135191893 (EFTUD2)
Spliceosome [BR:
ppus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135191893 (EFTUD2)
Complex C
U5 SnRNP specific factors
135191893 (EFTUD2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
135191893
NCBI-ProteinID:
XP_064030620
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Position
40:6895468..6929288
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDEDDEDMGEHDEDHAGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLVEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggccggagctggactccgac
gatgacgacgatgagctggggagagagtcgaaagatctggatgagctggaggatgatgag
gatgatgaggatatgggggagcacgatgaggaccacgctgggatggaggtggtgctgcac
gaggacaagaaatactaccccactgctgaggaggtctacgggcccgaggtggagaccatc
gtgcaggaggaggacactcagcctctgacggagcctatcatcaaacctgtcaagaccaag
aagttctctctgatggagcagacgctgccagtcactgtctatgagatggacttcctggca
gacctgatggacaactcggagctgatccggaacgtgaccctgtgcgggcacctgcaccac
ggcaagacctgctttgtggactgcctggtggagcaaacccacccagagatccggaagcgc
tacgaccaggacctctgctacactgacatattgttcacagagcaagagaggggagtgggg
atcaagagcaccccagtgaccattgtcctgccagacaccaaaggaaagtcctttctcttc
aacatcatcgacactccaggccatgtcaacttctctgacgaggtgaccgctggccttcgc
atctcggacggcgtcgtgctcttcatcgacgcggctgagggggtgatgctgaacacagag
aggctgatcaagcacgcggtgcaggagaggttggcagtgactgtgtgcatcaacaagatc
gacagactgatcctggagctgaagctgccccccacggacgcctactacaaactgcggcac
atcgtggacgaggtcaatggcctgatcagcatgtattccaccgatgagaacctcattctg
tctccccttctgggcaacgtctgcttctccagctcgcagtacagcatctgcttcacgctg
ggatccttcgccaagatctatgcagacacatatggagacatcaactaccaggagtttgcg
aagcggctctggggtgacatctacttcaaccccaagacgcgcaagttcaccaagaaggct
cccacgagcagttcccagcgcagctttgtggagttcatcctggagcctctctacaagatc
ttggctcaggtggtgggggatgtggacacgaccctgcccaggactctggatgaacttggg
atccacctgaccaaagaggagctgaagctgaacatccgtcccctgctgcgcctggtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacatcccctcc
ccaaaggtgggggccaagaccaaaatcgagcacacctacactggcggcgtcgactccgac
ctgggcgaggccatgagcgagtgcgaccctgacggcccactgatgtgccacacgaccaag
atgtacagcacagatgatggggtgcagttccacgcctttggcagggtgctcagtggcacc
atccatgctgggcagcctgtgaaggtccttggagagaactacaccctggaggatgaggag
gattcccagatctgcaccgttggccgcctctggatctcggttgccaggtatcatattgag
gtaaacagggttcctgctggcaactgggtgctgatagaaggagtggaccagcccatagtg
aagactgcaacggtcacagagcctcggggcaacgaggaggctcagatcttccgtcctctg
aagttcaacaccacctctgtcatcaagatagctgtggagccagtcaacccctctgagctg
cccaagatgctggatggcctccgcaaagtcaacaagagctacccctcactcaccaccaag
gtggaggagtctggggagcatgtgatcctgggcaccggcgagctctacctggactgcgtc
atgcacgacctgcgcaagatgtactccgagattgacatcaaggttgctgatcctgtggtg
acattctgtgagacagtggtggaaacatcatccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcctctggagaagggactggcagaggacatt
gaaaatgaagtggtccagataacgtggaacaggaagaagctgggggagttcttccagacc
aaatatgactgggacttgctggctgcccgctccatctgggccttcgggccggacgccacc
ggccccaacatcctggtcgatgatactctgccctcagaggtggacaagtccctgctgggc
tctgtgaaggacagcatcgtgcagggctttcagtggggcaccagggaagggcctctctgt
gatgaattgatccgcaacgtcaagttcaagatcctggacgcggtgatcgctcaggagccg
ctgcaccgcggggggggacagatcatccccacggctcgcagggtggtctactctgccttc
ctgatggccacccctcgtttgatggagccctactacttcgtggaggtgcaggcccctgct
gactgcgtgtcggcagtgtacacggtgctggccaggcggagaggccacgtgacacaagat
gctcccatcccaggctctcctctctacaccatcaaagccttcatcccagccatcgactcc
tttggctttgagacagacctgaggacccacacgcagggacaggccttctcactctctgtc
ttccaccactggcagatcgtgcctggtgaccccttggacaaaagcatcgtcatccggccc
ctggagccccagccagccccacacctggccagagagttcatgatcaagaccaggcgcagg
aagggcttgagcgaggatgtgagcatcagcaagttcttcgatgaccccatgctgctggag
ctggccaagcaggacgtcgtcctcaactaccccatgtga
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