Pseudomonas putida H8234: L483_23685
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Entry
L483_23685 CDS
T02706
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03030
DNA replication
pput03410
Base excision repair
pput03420
Nucleotide excision repair
pput03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L483_23685
03410 Base excision repair
L483_23685
03420 Nucleotide excision repair
L483_23685
03430 Mismatch repair
L483_23685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pput03032
]
L483_23685
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_23685
Enzymes [BR:
pput01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L483_23685
DNA replication proteins [BR:
pput03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L483_23685
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L483_23685
NER (nucleotide excision repair)
GGR (global genome repair) factors
L483_23685
MMR (mismatch excision repair)
DNA ligase
L483_23685
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L483_23685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGN79902
LinkDB
All DBs
Position
complement(5005131..5007461)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGQALSAFSQVRHEVPMLSLGNAFEETDLREFGRRVVDGLDQPGAVDFSCEPKLDGLAV
SLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIADSHIGT
LEQLKAWGLPISRELKHAAGIDECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVEVPSVCPVCGSQVERTQLVK
RSKGKAITSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLEFEQVVGLEGFAEVSSKKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIEQLLASGMKIQDEGELA
AEFAASTTLAGMIAKLDIPSVGPTGAEKLVARLDSLDKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKDK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAEQGIAI
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccacgaactgcgtgccgaactcgaccagcacaactaccgc
tactacgtgctcgacgagcccagtgtgcccgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgcttgaggctgaacacccccacctggtaacccctgattcgcccacccagcgc
gtcggcggccaggcgttgtccgcattcagccaggtgcgccatgaagtgcccatgctcagc
ctgggcaacgctttcgaagaaaccgacctgcgtgagttcggccgccgcgtggtagacggc
ctcgaccagcccggtgcggtcgacttcagctgcgaacccaagctcgacggcctggcggtg
agcctgctgtatcgcgacggtcagctggtgcagggcgccacccgtggtgacggcaccact
ggcgaggatatcagcgccaacgtgcgcaccgtgcgtaacatcccgctcaaactgcagggc
gaaggctggccagcggtgctggaagtgcgcggtgaggtgtacatgagcaaggccggtttc
gaccggctcaatgccgcccaggccgaagccggcggcaagaccttcgccaacccgcgcaac
gccgctgccggcagcctgcgtcagctggattcaaagattaccgccagccgcccgctggag
ttctgctgctatggcgttggccaggtgtccgagagcatcgccgacagccacatcggcacc
ctcgagcagctcaaggcctggggcctgccgatcagtcgcgagctcaagcacgcggcaggc
atcgatgagtgcctggcctactaccgcgatatcggcgaacggcgcaacagcctgccctat
gaaatcgatggcgtggtgttcaaggtcaacagcctggccgcccagcgcgagctgggcttc
cgtgcccgcgagccacgctgggcgatcgcccacaagttcccggccatggaagagctgacc
gaggtgctggacgtcgagttccaggttggccgtacaggggcagtaacgcctgtggcgcgc
ctgaaaccggtcaaggttgctggtgtgaccgtgtccaatgccaccttgcacaacatggac
gaaatcgcccgcctgggcctgcgcatcggcgacacggtaatcatccgccgtgccggtgat
gtgatcccgcaggtgatgcaagtcgtgctggagcgccgcccggaagatgcccgcccggta
gaagtgccgagcgtgtgcccggtctgtggttcgcaggtcgagcgtacccagctggtcaaa
cgcagcaaaggcaaggcaatcaccagcgaaggcgcggtgtaccgctgtgtgggtcgcttg
gcctgtggcgcccagctcaaacaggcgatcattcactacgtgtcccgccgtgccatggac
atcgacggcctgggcgagaagagcgtcgagcaattggtggatgaaggcctgatcggctcg
ccagctgacctgtacaaactggagttcgagcaggttgtcgggcttgaaggctttgccgag
gtctccagcaagaagttgctcgatgccatcgaagccagcaagcgcccgagcctggcgcgc
ttcatctatgccttgggcattcccgacgtgggcgaagaaaccgccaaggtactggcccgc
tcgctgggcagcctggcccgtgtgcagcaggcgttgccacaagtgctgacctacctgccg
gatatcggcctggaggtggcctacgaaatccacaacttcttcgaagacgagcacaaccag
aaagtcattgaacagcttctggccagcggcatgaaaatacaggacgagggcgaactggct
gcagaatttgctgccagcaccaccttggccgggatgatcgccaagctcgacatcccctcc
gttgggccgaccggtgccgagaagctggtggccaggctcgacagcctggacaagatcatc
gccgccgacggcatcgacctgcgccaagccctggcggccaagcaggctgacgcagtgcgt
gagttcttcaaggatgaagcgaatcagaagctggcgcgggacatcgaagcccagttgctg
gcgttcggcatgcattggagcagcgagaagaaggtcgccgaaggcttgccgctggccggg
cagacctgggtgctgaccggtacgctggagcgcatgagccgcgacatcgccaaagacaag
ctggaaagcctgggggccaaggtggccggctcggtgtctggcaagacccactgcgtggtg
gcagggccgggggcagggtccaagctggccaaggccgctgagctgggcgttaaggtgctg
gacgaagatgcctttgtcacattcctggccgaacagggcatcgctatctga
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