Pseudomonas sp. UW4: PputUW4_03595
Help
Entry
PputUW4_03595 CDS
T02357
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03030
DNA replication
ppuu03410
Base excision repair
ppuu03420
Nucleotide excision repair
ppuu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputUW4_03595 (ligA)
03410 Base excision repair
PputUW4_03595 (ligA)
03420 Nucleotide excision repair
PputUW4_03595 (ligA)
03430 Mismatch repair
PputUW4_03595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuu03032
]
PputUW4_03595 (ligA)
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_03595 (ligA)
Enzymes [BR:
ppuu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PputUW4_03595 (ligA)
DNA replication proteins [BR:
ppuu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PputUW4_03595 (ligA)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PputUW4_03595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputUW4_03595 (ligA)
MMR (mismatch excision repair)
DNA ligase
PputUW4_03595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PputUW4_03595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Ribosomal_S14
Motif
Other DBs
NCBI-ProteinID:
AFY20787
LinkDB
All DBs
Position
complement(4172932..4175289)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKNRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFNELKALEAAHPELITSDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGATVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG
EVFMSKAGFERLNATQMEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSA
DIADTHIGNLQQLKAWGMPISHELKLAQGIAECLDYYRDIGERRNALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLERRPENARPVQIPEQCPVCGS
HVERTQLIKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYALTFEQIVDLEGFAELSSKNLLGAIEDSKKPGLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIAELLKHGL
QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLQAVIGADWLDMRQAL
PEKQANSVREFFADEDNRQRSITAEAQLAEFGMHWQSEKKVVEGLPLAGQTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVEFLRE
HDISV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaagaaccgcattttagagctgcgcgctgagctggatcagcacaactat
cgctatcacgtgctcgacgagccgagcattccggacgtcgaatacgaccgcttgttcaac
gagctcaaggcgctggaagcggcccatcccgagctgatcaccagcgactcgcccacccag
cgagtgggcagcgcggcgctgtcggcgtttacccaggtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgtgagttcgaccgccgggtgaccgaa
ggcctggacttgccggcgggcgacctgttcggtggcggcgcaacagtcgaatacagctgc
gagcccaagctcgatggtctggccgtcagcctgttgtaccaggatggcctcctggtgcgc
ggcgcgacccgtggcgacggtacaacaggcgaagacatcagcgtcaacgtgcgcaccgta
cgcaacattccgctcaagctgcacggtactggctggccggcgaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgaacggctcaacgccacgcaaatggaagtcggc
ggcaagactttcgccaacccgcgcaacgcagcagcgggcagcttgcgccagctggattcg
aagatcaccgccaaccgtccactggaattctgctgctacggcatcggccaggtgtcggcg
gacattgccgatacgcacatcggcaatttgcagcaactcaaggcttggggcatgccgatc
agccatgagttgaagctggcgcagggtatcgccgagtgcctggattactatcgcgacatc
ggtgagcggcgcaatgcgctgccctatgaaatcgacggcgtggtgttcaaggtcaacagc
atcgcttcgcagcgcgaactgggttttcgcgcccgtgagccgcgctgggccatcgcccac
aaattcccggcgatggaagagctcaccgaactgctcgatgtggaattccaggtcggccgc
accggtgcggtgacaccagtggcgcgtctgaagccggtcaaggtcgcgggcgtcacggtg
gccaatgccacgctgcataacatggacgaagtggcgcgcctgggcctgatgatcggcgac
acggtgatcattcgccgcgccggtgacgtgattccgcaagtggtgcaggtggtcctggag
cgtcgtccggaaaacgcccggccggtgcagatcccggagcagtgcccggtgtgtggctcc
catgtcgagcgcacgcaactgatcaagcgcagcaagggtcgcgagacggtcagcgaaggc
gcggtgtaccgctgcgtcggtcgcctggcctgtggcgcgcaactcaagcaggccatcatt
cactttgtttcccgtcgagccatggacatcgaaggcctgggcgagaagagcgtcgagcaa
ctggtcgacgaaggcctggtgagttcgcctgccgatctgtacgccctgacgttcgaacag
atcgtcgatctggaaggctttgccgagctgtcgagcaagaacctgctcggcgccattgaa
gacagcaagaagccgggcctggcgcggttcatctacgccctcgggattcccgatgtcggc
gaagagacggccaaggtgctggcccgctccctgggttcgctggagcgggtgcagcaggcc
ttgccgcaggtgctgacgtacttgccggatgtcgggctggaggtcgcgcacgagatccac
agcttctttgaagacgcgcataaccagcaggtgatcgctgaactgctcaagcatggcttg
cagattcaggaccagggcgagttgggggccgagtttgccgcgagtacgacattgggcggt
ttcctcgacaaactgcatattccatcggtaggtccgggcggggcgcagaaactggcggac
aagttcggctcgctgcaggcggtgatcggtgctgactggctggatatgcgtcaggcgctg
ccggagaaacaggccaattcggtgcgcgagttttttgcggacgaggacaatcgccaacgc
tcgatcactgctgaggcgcagttggccgaattcggcatgcactggcagagcgagaaaaag
gtcgtcgaaggcttgccgctggccgggcagacctgggtgctgaccggttcgctggagctg
atgagccgcgatgtggccaaggacaaactcgaaagcctgggggccaaggtcgccggctcc
gtgtcggccaagactcattgcgtggtcgcagggccgggcgccggttcaaagttgaccaag
gccaatgagctggggttgaaggtgctggatgaagaggcgtttgtcgagtttctgcgcgag
cacgatatttcggtgtga
DBGET
integrated database retrieval system
