Pseudomonas parafulva: NJ69_04155
Help
Entry
NJ69_04155 CDS
T03520
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03030
DNA replication
ppv03410
Base excision repair
ppv03420
Nucleotide excision repair
ppv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NJ69_04155
03410 Base excision repair
NJ69_04155
03420 Nucleotide excision repair
NJ69_04155
03430 Mismatch repair
NJ69_04155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppv03032
]
NJ69_04155
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_04155
Enzymes [BR:
ppv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NJ69_04155
DNA replication proteins [BR:
ppv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NJ69_04155
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NJ69_04155
NER (nucleotide excision repair)
GGR (global genome repair) factors
NJ69_04155
MMR (mismatch excision repair)
DNA ligase
NJ69_04155
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NJ69_04155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AIZ32258
LinkDB
All DBs
Position
934729..937059
Genome browser
AA seq
776 aa
AA seq
DB search
MNAENRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALAAFSQVRHEIPMLSLGNAFEEADLREFGRRVVEGLDQREAVDYSCEPKLDGLAV
SLLYRNGQLVQGATRGDGTTGEDISTNVRTIRNVPLKLHGKGWPEVLEVRGEVYMSKAGF
ERLNAAQAEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQTSARVADSHIAT
LEQLKVWGLPISPELKHAEGIEQCLAYYQDIGARRNSLAYEIDGVVFKVNSLAAQQELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLDRRPDDARAVEVPSACPVCGSQVERTQLVK
RSKGRETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIRS
PADLYALKPEQVFELEGFAEVSSRKLVEAIEASKRPTLARFIFALGIPDVGEETAKVLAR
SLGSLERVKVALPQVLTYLPDIGLEVAHEIHNFFEDAHNRDVIEQLLASGMQLQDQGELA
AEFAASTTLAGMIAKLDIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQALTTKQAEAVR
EFFKVEANQQLARAIEAQLKDFGMHWHSEKKTANGLPLAGQTWVLTGTLERMSRDIAKEK
LESIGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVAFLAEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgaaaaccgaatccacgcactgcgcgccgagctcgaccagcacaactaccgt
tattacgtgctcgacgagcccagcgtgcctgacgccgaatacgaccggctgttcaacgag
ctcaaggccctggaggccgagcacccgcacctggttacgccggactcgcccacccaacgg
gtcggcggcgcggcgttggctgcgttcagccaggtccgccacgagatccccatgctcagc
ctgggtaatgccttcgaggaagccgacctgcgcgagttcggtcggcgcgtggtcgagggc
ctcgaccagcgtgaggcggtcgattacagctgtgagcccaagctcgatggcctggcggtg
agccttttgtaccgcaacggccagttggtgcagggcgccacccgtggcgacggcaccacc
ggcgaagacatcagcaccaacgtgcgcaccattcgcaatgtgccgctcaaactgcacggc
aagggctggcctgaggtgctggaggtccgcggtgaggtgtacatgagcaaggccggtttc
gagcgcctgaacgccgctcaggccgaggtcggtggcaagaccttcgccaatccgcgcaac
gccgcggccggcagcctgcgccagctcgactcgaagatcactgccagccggccgctggaa
ttctgctgctatggcgtgggacagacctcggcccgcgtcgctgacagccacatcgccacg
ctcgaacagctcaaggtctgggggctgcccatcagtcccgagctcaagcatgccgaaggc
atcgagcagtgcctggcctattaccaggacatcggcgcacggcgtaacagcctggcctac
gagatcgatggcgtggtgttcaaggtcaacagcctggctgcccagcaggagctgggcttt
cgcgcccgcgaaccgcgttgggccatcgcccacaagttccccgccatggaagagctcacc
gaggtgctggacgtcgagttccaggtcggtcgtaccggcgcggtgacgccggtcgcgcgt
cttaaaccagtcaaggtcgcaggcgttaccgtgtccaacgcgaccctgcacaacatggat
gagatcgcccgcctgggcctgcgcatcggcgacacggtcatcatccgccgcgccggcgac
gtgatcccccaggtcatgcaagtggtgctcgaccgccgtcccgacgacgcccgtgcggtg
gaggtgcccagcgcttgcccggtgtgcggttcgcaggtggagcgcacgcagttggtcaag
cgcagcaaaggccgcgaaaccaccagcgaaggcgcggtgtaccgctgtgtcgggcggctg
gcctgtggcgcccagctcaagcaggcgatcattcactacgtatcgcgccgggcgatggac
atcgacggtcttggcgagaaaagcgtcgaacaattggtcgatgagggcctgattcgctcg
ccggctgacctgtacgcgctcaagcccgagcaagtcttcgagctcgaaggcttcgccgaa
gtgtccagccgcaagctggtcgaggccatcgaggcgagcaagcgcccgaccctcgcgcgt
ttcatcttcgcgctgggcattcccgatgtgggcgaggaaaccgccaaggtgctggcccgt
tcgctgggcagtctggagcgggtgaaggtggcgttgccgcaggtgctgacctatctgccg
gacatcggtctggaagtcgcccacgagattcacaacttcttcgaggacgcgcacaaccgt
gacgtcatcgagcagttgctcgccagcggcatgcagttgcaggaccagggcgagctggcg
gccgagttcgccgccagtaccacgctggccggcatgatcgccaagctcgacatcccctcg
gtcggcccgaccggcgccgagaagctggtggacaagctcggcaccctcgacaagatcatc
gccgccgacggtatcgacctgcgccaggcgctcactaccaagcaggccgaggccgtgcgt
gagttcttcaaggtcgaggccaaccagcaactcgcccgcgccatcgaggcacagctcaag
gacttcggcatgcactggcacagcgagaagaagaccgccaacggcctgcccctggccggc
cagacctgggtactcaccggcacgctggagcgcatgagccgcgacatcgccaaggagaag
ctggagagcatcggcgccaaggtggccgggtcggtgtccggcaagacccattgcgtggtc
gccggccccggcgccgggtcgaagctggccaaggccagcgagttgggtgtcaaggtgctg
gacgaggacgccttcgtggccttcctcgcggagcagggcatcgcggtgtga
DBGET
integrated database retrieval system
