Pseudomonas putida W619: PputW619_0498
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Entry
PputW619_0498 CDS
T00675
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03030
DNA replication
ppw03410
Base excision repair
ppw03420
Nucleotide excision repair
ppw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputW619_0498
03410 Base excision repair
PputW619_0498
03420 Nucleotide excision repair
PputW619_0498
03430 Mismatch repair
PputW619_0498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppw03032
]
PputW619_0498
03400 DNA repair and recombination proteins [BR:
ppw03400
]
PputW619_0498
Enzymes [BR:
ppw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PputW619_0498
DNA replication proteins [BR:
ppw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PputW619_0498
DNA repair and recombination proteins [BR:
ppw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PputW619_0498
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputW619_0498
MMR (mismatch excision repair)
DNA ligase
PputW619_0498
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PputW619_0498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACA71003
UniProt:
B1J2Z7
LinkDB
All DBs
Position
complement(544308..546011)
Genome browser
AA seq
567 aa
AA seq
DB search
MSFFLRLAALLLLHTSIAQASHCPDWSTKQARTEVAQLRATLANWDDHYHRQGIALVADE
LYDQARHHLLHLQQCFGQEFTDPSPLASARGPIAHPVAHTGVEKLHDAAAVARWMTGKKG
VWVQPKVDGVAVSLVYRQGRLVQLLSRGDGLQGHDWSRHIKDLDSITRQLPQPLDVVLQG
ELYLRLQAHVQAEAGSSNVRGTVAGMLARKQLGPEPGASIGLFVWDWPHGPDNQGERLTQ
LAAWGFPDSQRFSTAIDTPEEATHWRLHWYRSPLPFATDGVILRQDSRPPADRWQPNAPY
WIAAWKYPFAQALAEVREVRFLIGRTGKVTPLLRLKPVTLDDRRISQVSLGSLARWRALD
IRPGDQVAISLAGLTIPRFDQVVHRAVERQVLPVPEAEQYGQHSCWQASDGCQEQFIARL
VWLSGKQGLAMPGTGKGTWKRLVQAGLVTSLTDWLTLDAQQLLSVPGISRKTATQLQRSF
DIGRNRPFAQWRKGLGVPAPAQVPRDENWQTLAGRSASDWQTLPGIGATRATQLANFFTH
EQVQRIATLLGTRGIDGFHGTDDVGSQ
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttttcctgcgcctcgcagccctgttgctgctccacacgtccatcgcccaagcc
agtcactgtccggactggagtaccaagcaagccagaaccgaagttgcccaacttcgcgca
accctggccaactgggacgaccattaccaccgccagggtatagcgctcgtagccgatgaa
ctctacgaccaggcccgacaccacctgctgcacctgcaacaatgctttggtcaggaattc
acagatccaagcccactggccagcgcacgcggccctattgcccaccccgttgcccacacc
ggcgtcgagaaactccatgacgcagctgccgttgcacgctggatgaccggcaagaagggc
gtatgggtgcagccgaaggtcgacggagtggcagtctcactggtctatcgccaaggccgg
ctggtacagctgctcagccgtggtgatggcctccaggggcatgactggagccgccacatc
aaggacctcgacagcatcactaggcaattgcctcaaccactggacgtcgtattgcaaggc
gagttgtacctgcgcctgcaagcgcacgtgcaagctgaggcaggcagcagcaatgtgcgc
ggcaccgtggccgggatgctggcacgcaagcagcttggccctgaaccgggcgcgagcatc
ggcctgttcgtctgggactggccgcacgggccggacaaccagggcgagcgcctcacacaa
cttgcagcctgggggttccccgacagtcagcgtttcagcacagctatcgacacccccgaa
gaggctacccactggcgcctgcactggtaccgctcaccgctgcccttcgccaccgatggc
gtgattctgcgccaggacagccgccccccggccgaccgctggcagcccaacgccccctat
tggatcgccgcgtggaaataccccttcgcccaagcgctggcagaggtacgggaggtacgc
tttctaatcggccgcacaggcaaagtcacgccgttgctcaggctcaaaccggtcaccctg
gatgatcgccggatcagccaggtcagcctcgggtccctggcccgctggcgggcgctcgac
attcgcccgggcgatcaagttgcgatcagccttgccggcctgaccattccacgcttcgac
caagtggtccaccgcgccgtcgagcgtcaggtattacctgtacccgaagctgaacagtac
ggccaacacagttgctggcaagccagcgacggctgccaagagcagtttatcgcgcgcctc
gtctggctcagtggcaagcagggcctggccatgccaggcaccggcaagggcacctggaag
cggctggttcaggcagggctggtgacatcgctgacggattggttgacgctcgatgcccaa
cagctgttatcggtaccgggcatcagcaggaaaaccgccacacagctacaacgcagtttc
gacataggccgcaacagacctttcgctcagtggcgcaaagggttgggcgtaccggcgcca
gctcaggtgccacgggacgagaactggcaaacgctggccggccggtctgccagcgattgg
caaaccttgcccggcattggcgcaacacgcgccactcaactcgcgaactttttcacccat
gagcaagtacaacggatagccacgctgctgggaacccgtgggatcgatggttttcacggg
acagacgacgttggttcgcaatag
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