Pseudomonas poae: H045_13740
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Entry
H045_13740 CDS
T02456
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03030
DNA replication
ppz03410
Base excision repair
ppz03420
Nucleotide excision repair
ppz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H045_13740 (ligA)
03410 Base excision repair
H045_13740 (ligA)
03420 Nucleotide excision repair
H045_13740 (ligA)
03430 Mismatch repair
H045_13740 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppz03032
]
H045_13740 (ligA)
03400 DNA repair and recombination proteins [BR:
ppz03400
]
H045_13740 (ligA)
Enzymes [BR:
ppz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H045_13740 (ligA)
DNA replication proteins [BR:
ppz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H045_13740 (ligA)
DNA repair and recombination proteins [BR:
ppz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H045_13740 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H045_13740 (ligA)
MMR (mismatch excision repair)
DNA ligase
H045_13740 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H045_13740 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGE26813
LinkDB
All DBs
Position
complement(3174063..3176417)
Genome browser
AA seq
784 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDESSMLEFDRRVTEGLDLPAGDLFGAVEYSCEPK
LDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRGEVF
MSKAGFERLNASQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTTDIS
DSHIGNLQQLQQWGLPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNRIAS
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTERRPEHARAVQIPERCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLTYEQIIDLEGFADISSKKLITAIENSRTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDGHNRQVIGALLSPDECGL
QLQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIQADWLDMRQAL
PEKQAKAVREYFDNPENARHALAIEQQLKDFGMHWESEKKAVEGLPEAGHTWVLTGSLEL
MSREVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLNVLDEAAFVAFLSK
HGKA
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgtattctcgaattgcgcgctgaactggatcagcacaactac
cgctatcacgtgctcgacgagccgagtattccggacgccgagtacgaccgcctgttccat
gagctcaaggccctggaggccgagcatccagagttggtgacacgcgattcgccgacccag
cgggtgggcagtgcggcgttgtcggcgtttacccaggtgcgccatgagatccccatgctc
agcctgggcaacgcgttcgatgagagcagcatgctggagttcgatcggcgcgtgaccgag
ggcctggacctgccggccggcgacctgttcggcgctgtggagtacagctgcgagccgaag
ctcgatggcctggcggtcagcctgctgtaccaggacggcgagctggtgcgtggcgccacc
cgtggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtgcgcaacatc
ccgctcaaactgcacggcagcggctggccggcgactctggaagtgcgcggcgaagtcttt
atgtccaaggccggtttcgaacggctcaacgcatcgcagctggacgttggcggcaagacc
ttcgccaacccgcgcaacgccgccgccggcagcctgcgccaactggactcgaagatcacc
gccagccgcccgctggaattctgctgctatggcatcggtcaggtgacgacggatatcagc
gacagccatatcggcaacctgcagcagttgcagcagtggggcctgccgatcagtcacgaa
ctcaaactggccaagggcattcaggattgcctcgattattaccgcgacattggcgagcgg
cgtaacagcctgccctatgaaatcgacggcgtggtgttcaaggtcaaccgcattgcctcc
cagcgcgaactgggctttcgcgcccgcgagccgcgctgggccattgcccataaattcccg
gccatggaagagctcaccgagctgctcgatgtggagttccaggtgggccgtaccggcgct
gtgacgccggtggcacgtctgaagccagtgaaggtggccggtgtgacggtgtccaatgcc
acgttgcacaacatggatgaagtggcgcgcctgggtctgatgattggcgacacggtgatc
atccgccgcgccggcgacgtgatcccccaggtggtctcggtggtcaccgaacgccgcccc
gagcatgcccgtgcggtgcagattcccgagcgttgcccggtgtgcggctcccacgtggag
cgcacgcagttggtcaagcgcagcaagggcaaggaaaccgtcagcgagggcgcagtgtac
cgttgcgtcggccgcctggcctgtggtgcgcagctcaagcaggcgattatccattttgtc
tcgcgccgggccatggacatcgacggcctgggcgacaaaaccatcgagcaactggtggat
gaaaaactcatcggctcgcctgccgatctctacaagctcacgtacgagcagatcatcgac
ctggaaggctttgccgatatttccagcaagaagctgatcactgcgattgaaaacagccgc
acgccaaccctggcgcgctttatctacgccctgggcattcccgatgtgggcgaggagacc
gccaaggtgctggcgcgctccctggcctcgctggagcgggtgcagcaggccttgccgcag
gtgctgacgtacttgccggacgtgggcctggaagtggcgcacgagatccatagtttcttc
gaggacggccataaccggcaggtcataggcgcgctgctgtcgccggatgaatgcggcctg
cagttgcaggatcagggcgacctgagcgccgaattcgccgccagcaccaccctgggcggc
ttgctcgacaagctgcacgtgccgtccgtcggtccgggcgcggcgcagaagctcgccgac
aagttcggcagcctcgaaggggtgatccaggccgactggctcgacatgcgtcaggcactg
cccgagaagcaagccaaggcggtgcgcgagtacttcgataacccggaaaatgcccgccat
gctctggccatcgagcagcagctcaaggacttcggcatgcactgggagagcgagaagaag
gccgtcgaaggcttgcccgaagccgggcacacctgggtcctcaccggctctctggagctg
atgagccgtgaggtggccaaggagaagcttgaaagcctgggcgccaaggtggccggttcc
gtgtctgcgaaaacccactgcgtggtggccgggccgggggcggggtcgaagctggccaag
gccagcgagttggggcttaacgtgctggatgaggcagcctttgtggcgttcctgagcaag
cacggcaaagcctga
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