Pseudomonas quebecensis: OSC50_06125
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Entry
OSC50_06125 CDS
T10532
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pqe Pseudomonas quebecensis
Pathway
pqe03030
DNA replication
pqe03410
Base excision repair
pqe03420
Nucleotide excision repair
pqe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OSC50_06125 (ligA)
03410 Base excision repair
OSC50_06125 (ligA)
03420 Nucleotide excision repair
OSC50_06125 (ligA)
03430 Mismatch repair
OSC50_06125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pqe03032
]
OSC50_06125 (ligA)
03400 DNA repair and recombination proteins [BR:
pqe03400
]
OSC50_06125 (ligA)
Enzymes [BR:
pqe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OSC50_06125 (ligA)
DNA replication proteins [BR:
pqe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OSC50_06125 (ligA)
DNA repair and recombination proteins [BR:
pqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OSC50_06125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OSC50_06125 (ligA)
MMR (mismatch excision repair)
DNA ligase
OSC50_06125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OSC50_06125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UZW19922
LinkDB
All DBs
Position
1293564..1295930
Genome browser
AA seq
788 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPTQ
RVGSAALSAFTQVKHEIPMLSLGNAFDEATMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGDLIRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTA
DISDTHIGNLKQLQQWGLPISHELKLAKGIQECLDYYRDIGERRNSLPYEIDGVVFKVNS
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTERRPEHARAVQVPESCPVCGS
HVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQ
LVDEHLIGSPADLYKLTYEQIIDLEGFADISSKKLIAAIENSKSPTLARFIYALGIPDVG
EETAKVLARSLASLARVQQALPEVLTYLPDVGLEVAHEIHSFFEDGHNQQVIGALLSPDE
CGLQLQEQGDLSAEFAASATLGGLLDKLNVPSVGPGAAQKLADRFGSLDGVIQADWLDMR
QALPEKQAKAVRDFFDNPQNARRALAIEQQLKDFGMHWHSEKKVIEGLPEAGHTWVLTGS
LELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKATELGLKVLDEEAFIAF
LARHNLSV
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgctaccacgttctcgacgagccgagcattccggacgccgagtacgatcgtctgttccac
gagctcaaggctctcgaagccgagcacccggagctggtcacgcgcgattctccgacgcag
cgggtcggcagcgcggcgttgtcggcgtttactcaagtcaagcatgagatcccgatgctc
agcctgggcaacgcgttcgatgaagccaccatgcttgagttcgatcgccgcgtcaccgag
ggcctcgatctgccggtgggcgatctgttcggcggcggtgcggcggtggaatacagctgc
gagccgaagctcgacgggctggcggtcagcctgttgtaccaggacggcgatttgatacgc
ggtgccacccgcggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgtaccgtg
cgcaatatccctttaaagctgcacggcagcggctggccggcgaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgagcggctcaacgcgtcgcagttggaagtgggc
ggcaagaccttcgccaacccgcgcaacgccgccgccggcagcctgcgccagctggattcg
aagattaccgccagccgcccgctggagttctgctgctacggcatcggccaggtcaccgcc
gatatcagcgacacgcatatcggcaacctcaagcaattgcaacagtgggggctgcccatc
agtcatgagctgaaactggccaagggtattcaggaatgcctcgactactaccgcgacatc
ggcgagcggcgtaacagcctgccgtatgaaatcgacggtgtggtgttcaaggtcaacagc
cttgcctcccaacgcgagctgggctttcgcgcccgcgaaccgcgctgggccatcgcccac
aaattcccggccatggaagaactgaccgaactgctcgatgtggaattccaggtcggccgc
acgggcgccgtgacgccggtcgcgcgcttgaaaccggtcaaggttgctggtgtaaccgtg
gccaacgccaccttgcacaacatggacgaagtggcgcgactgggcctgatgatcggcgac
accgtgataatccgccgcgccggcgatgtcatcccgcaggtggtttcggtggtcaccgag
cgccgcccggaacacgcacgcgcggtgcaggtccctgaaagctgcccggtgtgcggttcc
catgtggagcgcacgcaactggtcaagcgcagcaaaggcaaggaaaccgtcagcgagggc
gcggtgtaccgctgtgtcgggcgcctggcctgcggcgcgcagctcaagcaggcgatcatc
cacttcgtgtcgcgtcgcgccatggacatcgacggcctgggtgacaagaccattgagcaa
ctggtggatgaacacctcatcggttccccggctgacctctataagctcacgtacgagcag
atcatcgacctggaaggcttcgccgatatctccagcaaaaagctgatcgccgccatcgaa
aacagcaagtcgccgaccctggcgcgctttatctacgccttgggtattcccgatgtgggc
gaggagaccgccaaggtgctggcgcgctcgctggcctcccttgcgcgcgtgcaacaggct
ttgccggaagtgctcacgtacttgccggacgtgggcctggaagtggcgcatgagatccac
agtttctttgaggacggccacaaccaacaggtgatcggcgcgttgctgtcgccggacgaa
tgcggcctgcagttgcaggagcagggcgatctgagcgccgaattcgccgccagcgccacc
ctcggcgggttgctcgacaagctcaatgtgcccagcgtcggtcccggcgccgcgcagaaa
ctggcggacagattcggcagcctcgacggcgtaatccaggccgactggctggacatgcgc
caggcattgcccgagaagcaggccaaggccgtgcgtgactttttcgataacccgcagaat
gcgcgccgcgccctggcgatcgagcagcagctcaaggacttcggcatgcactggcacagc
gagaaaaaagtcatcgaagggttgcccgaagccggccacacctgggtgctgaccggctcg
ctggagctgatgagccgcgacgtggccaaggacaagctggaaagcctgggcgccaaggtg
gccggctccgtctcggccaagactcactgcgtggtcgcgggccccggcgccggctccaag
ctgaccaaggctaccgagctcggtttgaaagtactggatgaagaggcatttatcgctttc
ctggcccggcacaacttatctgtctga
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