Pseudomonas qingdaonensis: KH389_02085 Help Entry KH389_02085       CDS       T07622                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pqi  Pseudomonas qingdaonensis Pathway pqi03030   DNA replication pqi03410   Base excision repair pqi03420   Nucleotide excision repair pqi03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pqi00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     KH389_02085 (ligB)    03410 Base excision repair     KH389_02085 (ligB)    03420 Nucleotide excision repair     KH389_02085 (ligB)    03430 Mismatch repair     KH389_02085 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pqi03032]     KH389_02085 (ligB)    03400 DNA repair and recombination proteins [BR:pqi03400]     KH389_02085 (ligB) Enzymes [BR:pqi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      KH389_02085 (ligB) DNA replication proteins [BR:pqi03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      KH389_02085 (ligB) DNA repair and recombination proteins [BR:pqi03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      KH389_02085 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      KH389_02085 (ligB)    MMR (mismatch excision repair)     DNA ligase      KH389_02085 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       KH389_02085 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_DNA_ligase DNA_ligase_aden RNA_ligase Motif Other DBs NCBI-ProteinID:  QVL19396 UniProt:  A0ABX8DT18 LinkDB All DBs Position complement(443950..445602) Genome browser AA seq 550 aa AA seqDB search MPFKLLSGLLFASTLACTPTTALARPCPDWPPAVAQSELKQLGERLADWDDHYHRLGVAL ISDELYDQSRARLQHLQACFPGTGAPPADPLGTATGPLRHPIPHTGLNKLPDEAAVRAWM HGKQDLWVQPKVDGVAATLVYAKGRLVRLISRGDGAYGHDWSRHLPALGALPHTLPEPLD LILQGELFWRLDGHVQAAAGSRNARGNVAGLMARKQLTPAQGAVVELFAWAWPQGPLDQR ERLARLSALGFAYSEAFSQPVQTFDQAAHWRQHWYRTPLPFASDGVVLRQGRRPPGERWQ ARAPYWIAAWKYPFAQVLAEVRRVQFNVGRTGRITPVLQLAPVQLDDRTVRQVSVGSLSR WQQLDIRPGDQVAISLAGLTIPRLDGVVHRALERREMEVPAADAFHPLSCWELSAGCRQQ FLARLQWLGGKQGLALPGAGPASWERLVDAGQLRTLADVLELPAEHPLYPALEQARQRPF ATWARALGMPAPRTLAAGDTWAAMAARDAAQWQAEPGVGAHRAGQLLAFFAHPQVQALAA RLREHTIEGF NT seq 1653 nt NT seq  +upstreamnt  +downstreamnt atgcccttcaagctgttgtccggcctgctgttcgccagcacgctcgcctgtaccccaacc accgccctcgcccggccctgccccgactggccaccggcagtggcgcaaagcgaactcaag cagctgggcgagcgcctggccgactgggacgatcattaccatcgcctgggcgtcgcgttg atcagcgacgagctctacgaccagagccgggctcgcctgcaacacttgcaagcctgcttc cccggcaccggtgcgcccccggcagacccgctcggaaccgccaccggcccgttgcgccac cccatcccccacaccggcctgaacaagttgcccgacgaagccgccgtgcgcgcctggatg cacggcaagcaggacctctgggtacaacccaaggtggatggcgtggccgccacgctggtc tatgcaaagggccggctggtgcgcctgatcagccgcggcgacggcgcctacgggcatgac tggagccgccacctgccggcactgggcgccctaccccacacgttgcccgaacctctggac ctgatactgcaaggcgagctgttctggcgcctggacgggcatgtgcaggccgcagcgggc agccggaatgcccgcggcaacgtcgccgggctgatggcgcgcaagcagctcacccccgcg cagggcgcggtggtcgagctgttcgcctgggcctggccgcagggccccctggaccagcgc gagcggctggcacgcctgagcgccctgggctttgcctacagcgaggcgttcagccagccg gtgcagaccttcgaccaggccgcccactggcgccagcactggtaccgcacgccactgcca ttcgccagcgacggcgtggtgctgcgccagggccggcgtccgcccggcgagcgctggcag gcccgggcgccgtactggatagcggcatggaaataccccttcgcccaggtgctggcagag gtgcgacgcgtgcagttcaacgtggggcgcaccggtcgcatcaccccggtgctgcaactg gcaccggtgcagttggatgaccgcacggtgcgccaggtcagcgtgggctcgctaagtcgc tggcagcaactggacattcgcccgggcgatcaggtggcgatcagcctggcaggcctgacc attccccgtctggacggcgtggtgcaccgcgccctcgaacggcgcgagatggaggtaccg gcggccgatgcgtttcatccgttgagctgctgggagctgagcgccgggtgtcgtcagcag ttcctggccaggttgcaatggctgggcggcaagcagggcctggcactcccaggtgccggg ccggccagctgggagcgcctggtcgacgccggccagttgcgcacactggccgatgtgctg gaactgcccgccgaacatccgttgtaccccgccctcgaacaggcccgtcagcgacccttt gccacctgggcgcgggccctgggtatgccggccccgcgtacgttggcagcgggggacacc tgggccgcaatggctgcccgcgatgcggcgcaatggcaggccgagcccggcgtgggtgcc caccgtgccggccagttgctggcctttttcgctcacccgcaggtgcaggccctggcggcg cggttacgtgaacatacaatcgagggtttctaa

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