Psychrobacter raelei: MN210_03060
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Entry
MN210_03060 CDS
T10149
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prae Psychrobacter raelei
Pathway
prae03030
DNA replication
prae03410
Base excision repair
prae03420
Nucleotide excision repair
prae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MN210_03060 (ligA)
03410 Base excision repair
MN210_03060 (ligA)
03420 Nucleotide excision repair
MN210_03060 (ligA)
03430 Mismatch repair
MN210_03060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prae03032
]
MN210_03060 (ligA)
03400 DNA repair and recombination proteins [BR:
prae03400
]
MN210_03060 (ligA)
Enzymes [BR:
prae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MN210_03060 (ligA)
DNA replication proteins [BR:
prae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MN210_03060 (ligA)
DNA repair and recombination proteins [BR:
prae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MN210_03060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MN210_03060 (ligA)
MMR (mismatch excision repair)
DNA ligase
MN210_03060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MN210_03060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Ribophorin_II_3rd
DUF3701
Motif
Other DBs
NCBI-ProteinID:
WXX24474
UniProt:
A0AAU6PWH0
LinkDB
All DBs
Position
599833..601893
Genome browser
AA seq
686 aa
AA seq
DB search
MTQNTADTHASAQAQEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEE
RYPELTQPDSPTASVGDNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADR
NPEYEIEMKLDGLAVSLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDID
VLEVRGEVLMPKAGFKRLNRLAEENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYS
VNQGLPEAITLQSAALTWLKQLGFTVSDFERVKTAQQVQDYYESMIQKRADLAFEIDGMV
IKVDDLTLQSQLGALSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQV
GGVTVSNVTLHNFGEIQRLDVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPTHC
PVCDSPVVLPEGEALARCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLISFFEHGIV
KTVADIYHLNEHADELVTLEKLGEKSVSNMLRAIEESKKTTLARFIYALGIRGVGETTAQ
NLAQYFGDLPELMGASIDALEAVPDVGHITAELIYNFFRAEHNIEVINALQQAGVYWDKV
EQQALDNLPLEGQTWVITGTLVASGMSRDDAKAHLQALGAKVSGSVSAKTSALLAGEKAG
SKLTKAQSLGVRVVLEDEFLKMIGAS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaacacagcagacactcatgcctcagcacaagctcaagaggtcattgcaaaa
atgcgtaccttgatcgcacaggtgcgtaaacacaacaatgcttattatgtgatggatgag
ccaaccatcagtgacaatgaatatgaccagttgcgcttaagtctcattgagcttgaggag
cgttatcctgagttaactcagcccgacagtccgacggctagcgtgggcgacaatcctctg
ccatcattctcccaagtgcagcatgacattgctatgctgtcgctgggtaatatttttaat
tatcaagacttacaagagtttatgcgccgggtcaatgaccgtctaagtgatgctgatcga
aatcctgagtatgagattgagatgaaattagatggcttggctgtttcattaaaatatcat
aacggacaatttgtgcgcggcgtgactcgtggcgatggtcaaatgggcgaggacattacc
caaaacgtgaagaccatcaataacattccactggtgatagaagcggcgcaagatattgat
gtgcttgaggtgcggggcgaggtactgatgccaaaagcaggctttaagcgcttaaaccgt
ttggcagaagaaaatggtgataaaacctttgccaacccccgtaacgcagcagcaggtagc
ctacgtcaattagacccagccgtggctgccagtcgtcctttggctttttatgcgtattcg
gtgaaccaaggcttgcctgaagcgattactttgcaatcggcggctttgacctggcttaag
cagttaggctttactgttagtgactttgaacgggtaaaaacagcccagcaagttcaagac
tactatgagtcgatgatacaaaaacgggcagatttagcctttgaaattgatgggatggtc
attaaggtcgatgacttaacgctacaaagtcaactgggcgcgttatcacgtgaaccgcgc
tgggccaccgcctataagttccctgctgaaacggtgatgaccacactcaatagtattgaa
tggcaagtggggcgtaccggtcagctgactccagtgggcaagcttgagccagtgcaagtg
ggcggtgtgacggtcagtaacgtgaccttgcacaacttcggggaaatccagcgccttgat
gtgcgtgcaggtgataccgtcagcgtccaccgagcgggcgatgtgatacctaaagtgact
cgggtatggcatgatttgcgccctgagggtacctcggcggtgacgctgccaacccactgt
cctgtgtgcgactcacctgtggtactgccagagggtgaagccttggcacgctgcaccggt
gagctgttttgtccggcgcagcagcaagaggcactaattcactttgtatcacgtaaagcg
atggatattgatgggctcggtgagcgctggttaatcagtttctttgagcatggcatcgtc
aaaactgtggccgatatttatcacttaaatgagcatgccgatgagctggttactctagaa
aaattgggcgagaagtccgttagcaatatgttgcgcgccattgaagagagtaaaaaaacc
acactggcgcgctttatctatgcgctaggcattcgcggtgtgggagagaccacagcacag
aatctggcacaatattttggtgatttgcctgaattgatgggtgccagcattgatgcctta
gaggccgtacctgacgtgggccatatcaccgctgagcttatttataatttcttccgtgct
gagcataacatcgaagtcattaacgcattgcagcaagctggcgtgtattgggataaggta
gagcagcaggccttagacaatctgccccttgagggccaaacgtgggtgataacaggtacc
ttggtcgccagcggtatgtcacgcgatgatgccaaggcgcatctgcaagctttgggtgca
aaggtctcaggcagcgtatcggccaaaacctcggcattattggccggtgaaaaggcaggc
tctaagttgaccaaagcgcagagtctgggggtgcgtgtggtgttagaggatgagttctta
aagatgattggggcgtcatga
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