Podarcis raffonei (Aeolian wall lizard): 128399652
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Entry
128399652 CDS
T09310
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128399652 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128399652 (EFTUD2)
Spliceosome [BR:
praf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128399652 (EFTUD2)
Complex C
U5 SnRNP specific factors
128399652 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
128399652
NCBI-ProteinID:
XP_053217271
LinkDB
All DBs
Position
13:complement(14407958..14437057)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDEMGRDSKDLDELDEDDDDDDIGDHDDDHPGMDVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLVEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFASSQYSICFTLGSFAKIYADMYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVHHIPSPKAGAKTKIEHNYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKTLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatacagatctgtatgatgaatttgggaattatattggcccagagcttgattctgac
gacgatgacgacgagatgggtcgggattcaaaggatctagatgagctcgatgaggacgac
gacgatgatgacattggagaccacgatgatgaccaccctgggatggatgtggtgctgcat
gaggataagaaatactatccaacggctgaggaggtttacggtccagaggtggagaccatt
gtgcaagaggaagacacacagcctttgacagagcctattattaaacccgtgaagaccaag
aaattctccctcatggagcaaacattgccagtcacagtgtatgagatggatttcctagca
gacttgatggacaactcagagctgattcggaatgttacactttgtgggcacctgcatcat
ggcaagacttgctttgtggattgcctggttgaacagactcatcctgagatcagaaagcgt
tatgaccaggatctttgctatacagatatactcttcactgagcaagagagaggagttggg
atcaagagcacgccagtgaccattgttctcccagacacaaagggcaaatcatttctcttc
aacatcatggacacaccaggtcatgtaaacttctccgacgaggtcacagcaggtctccgc
atttctgacggcgtcgtactctttattgatgctgctgagggagtcatgctcaacaccgaa
cggttgatcaagcatgcagtgcaggagaggctggcagtgaccgtgtgcattaacaagatt
gaccggctgatactagaactgaaattgccgcctactgacgcttactacaagctgcggcac
atagtggatgaagtcaacggcttaatcagcatgtattccacagatgagaatctgattctt
tcaccactcctgggcaatgtctgttttgccagctcccagtacagcatctgtttcacgctg
ggttcttttgccaagatctatgctgacatgtacggagacatcaattaccaggagtttgcc
aagcgcctttggggagacatctacttcaaccccaagacgagaaaattcaccaaaaaagcc
ccaaccagtagttcacagcggagctttgtggaattcatccttgagcctctctacaagata
ctagctcaggttgttggggatgttgacaccaccctcccccggactctggatgaactgggg
atccacctgaccaaagaagagttgaaactcaacatccgccccctcttgaggctcgtctgc
aagaagttttttggggagttcacaggctttgtggacatgtgcgtgcatcacatcccctcc
ccaaaagcgggcgcaaagaccaagatcgagcacaactacacaggcggagttgactcggac
ctgggagaggccatgagcgaatgtgaccctgatggcccgcttatgtgccacaccacaaag
atgtacagtacggacgatggggtccagttccatgctttcggcagggtgctgagtgggacc
atccatgcagggcagcctgtcaaggtcctcggagaaaactacaccctggaagatgaggag
gactcgcagatttgcacggtggggcgcctctggatctctgtagcaaggtatcacatagag
gtgaacagagtccctgctggcaactgggtgctcattgagggagtggaccagcctattgtg
aagacagccaccatcactgagcccagaggcaatgaagaggctcagatcttccgccctttg
aaattcaacaccacatctgtcattaaaatagctgttgagcctgtcaacccctctgagctc
cccaagatgctggacggtctgcgtaaggttaataagagctacccatctctcaccaccaag
gtggaagaatctggggaacacgtgatcttgggaacaggcgagctgtatcttgactgtgta
atgcacgatctgcgaaaaatgtattcggagattgatatcaaggtagctgaccctgttgtc
acattctgcgagacggttgtggaaacctcttccctgaagtgttttgccgagacgcccaat
aaaaagaacaagatcacaatgatagccgagcctttggaaaagggtctggctgaagacatt
gagaatgaagtggtgcagataacatggaacaggaaaaagttgggtgagtttttccagacc
aaatatgactgggatttgctggctgcccgttccatctgggcctttgggcctgatgctact
ggaccaaacatcctggtggatgacaccctgccctcagaggttgacaaaaccctcttgggt
tccgtgaaggacagcatcgtgcagggcttccagtgggggaccagggaagggcccctttgt
gacgagttgatccgcaatgtgaaattcaagatcctggacgctgtgatcgcccaggaaccg
ttgcaccggggaggtgggcagatcatcccaacagccaggcgggtggtgtattctgccttc
ctcatggccaccccacggttaatggagccatattacttcgtggaagtccaggcccctgcg
gattgcgtctctgcagtatacacggtcctggccaggcgcagaggccacgtgacccaagat
gcaccaatcccaggttcccctctgtacaccatcaaagccttcatcccagctattgactcc
tttgggtttgagacagacctcaggacacacacccagggacaagcattctcactgtctgtc
ttccaccactggcaaattgtgcctggtgaccccttggacaagagcattgtgattcgacct
ctggagccccagccagccccacatctggccagagagttcatgatcaaaaccaggcgcagg
aaggggctaagtgaggacgtgagcatcagcaagttcttcgacgatcctatgttgctggag
ctggccaaacaggatgtggtgctgaactaccccatgtga
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