Podarcis raffonei (Aeolian wall lizard): 128399995
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Entry
128399995 CDS
T09310
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03440
Homologous recombination
praf03460
Fanconi anemia pathway
praf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128399995 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
128399995 (BRCA1)
03460 Fanconi anemia pathway
128399995 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
praf01009
]
128399995 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
praf04121
]
128399995 (BRCA1)
03036 Chromosome and associated proteins [BR:
praf03036
]
128399995 (BRCA1)
03400 DNA repair and recombination proteins [BR:
praf03400
]
128399995 (BRCA1)
Enzymes [BR:
praf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128399995 (BRCA1)
Protein phosphatases and associated proteins [BR:
praf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128399995 (BRCA1)
Ubiquitin system [BR:
praf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128399995 (BRCA1)
Multi subunit type E3
BRCC complex
128399995 (BRCA1)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128399995 (BRCA1)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128399995 (BRCA1)
BRCA1-A complex
128399995 (BRCA1)
BRCA1-B complex
128399995 (BRCA1)
BRCA1-C complex
128399995 (BRCA1)
BRCA complex
128399995 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
128399995 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-Nse
BRCT_2
zf-RING_6
RING_XB3-XBAT31
Prok-RING_4
U-box
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
128399995
NCBI-ProteinID:
XP_053217886
LinkDB
All DBs
Position
13:complement(10690123..10742440)
Genome browser
AA seq
1691 aa
AA seq
DB search
MDSSIPSIAEVRGILLAMQKNLECPICLEVMKEPVSTNCAHIFCSFCMFKLLKQKKGAVR
CPLCNAKVTKRSLWEDVRFKQVIKVVLEAICAFEHDTGLKFSDDLCFPKKALEDASASVS
WKEKQVIDCKGYRDRLKRVKEVKKRNASLEGETSNLPLDGGTRRSLRKKSNSSKAAVFEI
GSDSSEDAFKKTDTIRCVSLRRNHPAQVDEGCAKNESPSPFHMEFSELSAEDETPLNILG
VCDYLEELGNTEGTLASIGKLEIPEKNVAVEKSQGLSSPDPCLRKHDRNSNSMPEGGSCS
LLNMAQLVGEATNPTVDKQAGHDAGNVSTGLPSGHKHVLCENEEQLLQSQTSPERPLSQV
SGKKLMRSIQKVKAWLSKSKEGLSPRSLQHTHTQEVDQDPDLSDGDSLVSQKTEQIGYQK
VFTVECEGDRPLPKPVASKAEDKLFGRTYKRKRKSTPLWNKRDTVCIQAKEGIAKNTESC
DTPVKRLSRKRKATSELLPDDFIRRQDVEVNSRRPGGDEDTALEEGGQAPALVDDSPVAD
QKEVELPTEFPVKEGLSALETDLNEPSQSICLKSPESNCNPLKKKSNTMSKIRRQLIKPV
GELQLMMDRSSRSPEKAKIQTDDKLREVGTSQVQVRRSRRLQLSTEDAWRRSEPVKRGRK
QLDKRETKKRRWSYEENMPTPSIAENYPSVLQGRLQKGLSLSDTSLMDVEGDASRACANP
PASPQVGVEQTTEGSSPCCIVPSASSQDSCSLLHFASPEVEQITSEDKQLTVAHQTEKNV
LCTQKLEGDEFGTGDMMRSCKPPETNDEAAGTLELNSETEDSELDTNFMQKIFNGCKRQS
FLLHPVKESAAEIQKETRIGLGEDGNVDCSKKSTCINTFFEEKRDAVACEVNSFVQRLAC
CATGFPDHERRTEHPQLASQTAFPDHPSTPDQLATKNPDSPQQSQKPVTKKSMSPQIRGE
VANSNNSGSSGSPNVWRNVIIHSTSLSGINETRSSINNSEDAESESTKNKGLALNSQPEF
MQPCSVICQLPHSEFSGVHGEKNSPMEQKQLHGDTEEATNNCNTGTPKCLVHSNNLEQCA
EEEYHGFEVSSETPEGLLGPVIRSIEGSPNLGETERSDSLAMSPGRDEQTPLKGDLGSGN
RRSSRLSHKGLVRTQQRWARKLPSSEEDSSEDEELPSFQALIFGKSASTPLDPLKKKKTS
GGMPALKSSNKCNVETKDEHVCPSQDSECSMKLFSSQSHTAEDFRSRPHVSRHLTPAPTS
RENLESLRENKKGTQPRDEVSKDAGQQKDEQQEQVASEFNLGEETLDYDSEASCLGDSSG
LSSQSEILTTQQKNAMQNSLKKLQRKMAILEAVLKQGSQSAVHEGSLHLGEEGDFTGGQT
KSARGSKADLSSESKQSLQGAFSTPVRNMQGTPGSSTSKEQISSLLAAETAMGPPAATHD
AGRQSALRHSAQGSPVCPLSQITHCSTSKGNSERPFLTSKKNMSLVASGLNQGELRLVQM
FARKNESTWSNKISYETTHVVMKTDEDLVCERTLKYFLGIAGRKWVVSYHWVVQSLKERR
VLNEEDFEVRGDMINGRNHQGPKRARESPVGKLFQGLEICCYGPFTDMLPEQLEWMVELS
GASIVKEPRLFSHSTKSTAVVVVQPEAWSEDTACQGIPPQCSATVVSREWMLDSIACYQR
QAFDEYIVQQV
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggattcctccattccaagcattgcggaggttcgtggcatattgctggctatgcagaag
aacttggaatgcccaatatgcctggaggtaatgaaggagccagtctcaacaaactgtgcc
cacatcttctgcagtttctgcatgtttaagctccttaaacagaagaagggtgcggtacgg
tgtccactttgcaatgccaaagtcaccaaaagaagtctatgggaagatgtccgatttaag
caagtaatcaaagtggtgctggaagccatctgtgcttttgaacatgatacagggcttaag
ttttcagatgatctgtgtttccctaagaaagctttagaagatgcttctgcttctgtttca
tggaaagaaaaacaagtcattgattgcaaaggctacagggacagactgaagagagtgaag
gaagtgaaaaagagaaatgctagcttggaaggtgagacctccaatttgccattagatggt
ggaacaaggcgctccctgagaaagaaaagcaattccagtaaagccgctgtgtttgaaatt
ggatcagactcttctgaagatgcatttaagaagacagatacaatcagatgtgtgagttta
agacgtaatcatccagctcaagttgatgaagggtgtgccaagaatgaaagcccaagccct
tttcacatggagttttctgagctgagtgctgaagatgagacaccattaaatatcctaggt
gtatgtgattatttggaagaacttggaaacacagaaggaactctagccagcattggaaag
ttagaaattcctgagaagaatgttgctgtggaaaagagtcagggtttgtcttctccagat
ccctgcttgcgtaaacatgacaggaactccaattccatgccagagggtggttcttgctct
ttactaaatatggcacaattggttggtgaagccacaaatcccactgtagataaacaggct
ggtcatgatgcaggaaatgttagtacggggctgccttctggacataaacacgtcctgtgt
gaaaatgaggaacagctactgcagtcacaaacttcccctgaacgtcctctgagtcaagtc
tctgggaagaaactgatgcggagcatccagaaagtcaaagcatggctgtctaaaagcaag
gagggtctttctccaagatccctgcaacatactcacacacaggaggtggatcaagatcca
gacttgtcagatggagactctctggtctcccagaagactgaacagattggataccagaaa
gtcttcacagtggaatgtgaaggtgacaggcctttgcccaaaccagttgcctctaaagct
gaggataaactatttgggagaacgtacaagaggaaacgcaaatcaacccctctttggaat
aagagggacacagtttgtatccaagcaaaggagggcattgctaagaatacagaatcctgt
gatacacctgtaaaaagattatcgcgaaagaggaaggctacatcagaattgctaccagat
gacttcattaggaggcaagatgtggaagtaaatagtaggaggcctggtggagatgaagat
actgctttggaagaaggtggccaagctcctgctcttgtagatgatagccctgtggcagat
caaaaggaagttgagctgccgactgaatttcctgtcaaggaagggctgtctgctttggaa
actgatttaaatgaaccatctcagagtatatgcctgaaatcgccagaatcaaactgtaac
cctctaaagaagaaaagtaacactatgagcaagatacgtagacaattaatcaagcctgtt
ggcgaattgcagttaatgatggacagaagctccaggtcccctgagaaggcaaagatacag
actgatgataagttaagggaagttggcacaagccaggtgcaagtcagacggagcagaagg
cttcagttgtcgacagaagacgcctggaggagaagtgagccagttaagcgaggaaggaaa
cagttggataagagagaaacaaagaagcgtaggtggtcttatgaagaaaacatgccaacg
ccttccatagcagaaaattaccccagtgtgttgcagggcaggctccaaaagggcctgtct
ttgtcagataccagcctgatggacgtggaaggggatgcaagtagagcttgtgctaaccct
ccagcttctcctcaggtaggtgttgaacaaaccacagagggcagcagtccttgttgcatt
gttcccagtgcaagttcccaggacagctgctcacttctgcattttgcttctccggaggtg
gagcaaatcacttctgaggacaaacagctcacagtagcacaccagactgagaagaatgtg
ttatgtacccagaaactagagggcgatgagtttggcacaggggatatgatgagaagctgt
aaaccccctgaaacaaatgatgaagctgcaggaactttggagctgaactcagaaactgag
gacagtgaactggatacaaacttcatgcagaagatattcaatggctgcaaacgccagtca
ttcttgttgcatccagtaaaggaatctgctgcagaaattcaaaaagagacacgcattggc
ttgggggaagatggcaatgttgactgttcaaagaaatcgacttgcatcaatacatttttt
gaggagaagagagatgctgttgcctgtgaggtgaacagctttgtccaaagactggcatgt
tgtgctactggtttccctgatcacgagaggagaactgagcatccccagcttgcctcacaa
actgcattcccagatcatccatccacaccagatcaattagccaccaagaatcctgacagt
ccccagcaaagtcaaaagccagtaactaaaaagagtatgtcccctcaaattaggggagaa
gttgcaaactcaaataacagcggcagcagtggaagcccaaacgtctggagaaatgtcatc
atccacagcaccagtttaagtggcattaatgagacacgttctagtataaacaactctgaa
gatgcagaatctgaaagcactaaaaacaaagggctggcattaaactctcagccagaattc
atgcagccatgttctgtaatttgtcagctaccacattctgaattcagtggcgtccatggt
gaaaagaatagccccatggaacaaaagcaactgcatggtgacacagaagaagcaaccaat
aattgcaatacaggcactcctaagtgcttggttcacagtaataatttggaacagtgcgcc
gaggaggagtaccatggctttgaggtgtcctcggagacaccagagggcttgctaggccct
gtcatcagaagcatagagggctcacctaaccttggggaaacagagaggagtgatagcttg
gccatgtctcctggcagagacgagcaaaccccacttaagggagacctgggtagtggcaac
agaagaagttccaggctgagccataaaggcctcgttcgcacacagcagagatgggcacgg
aagctgccatcctcagaggaagattctagcgaagatgaagagttgccatcttttcaggca
ctgatatttggtaaatcggcaagcacaccgctagacccactgaaaaagaagaagacatcg
ggagggatgccagcactgaagagcagcaacaaatgtaatgtagaaaccaaggatgagcat
gtctgtccaagtcaggattcggagtgctctatgaagctgttttcttcccagtcacacaca
gctgaggatttccgcagcaggcctcatgtctcaagacacttaactccagctcccacttcc
agagaaaatctggaaagtctcagagagaataaaaaaggcactcagcccagggatgaagtc
tcaaaagatgctggacaacagaaagatgaacagcaagaacaagtggcttcagaattcaat
ttaggtgaagagaccttggactatgacagtgaagctagctgcttgggggattcatcaggc
ctatcttcccagagtgagattctcaccacacagcaaaaaaatgccatgcaaaacagctta
aagaaactccagcggaagatggctattcttgaagcagttctcaaacagggaagccaaagt
gctgtccatgaaggatcactgcatcttggtgaggaaggtgatttcactggaggacagaca
aaatcagcaaggggaagtaaagcagatttgagttctgaaagtaaacaaagcctccaaggt
gccttttctacccctgtgagaaacatgcaagggactccagggtcctcaacgtctaaagag
cagatttccagccttttggccgcagagacagcaatggggcctcctgctgccacacatgat
gctggaagacaaagtgcattgaggcatagtgcacaaggaagtccagtctgccccttgtca
caaatcacacattgtagcacaagcaaagggaattcagagaggccatttctgacaagcaag
aagaatatgtctctggtggcctcgggtctgaaccagggcgagttgcgactagtacagatg
tttgccaggaaaaatgagagcacttggtctaataagatttcttatgaaacaactcatgta
gtaatgaaaacagatgaggatctggtttgcgagcggaccctgaaatacttcctaggtatt
gctggacgtaagtgggtggtgagctaccattgggttgtacagtcactgaaggaaagaaga
gttcttaatgaggaggactttgaagttagaggagacatgatcaatgggagaaaccatcag
ggacccaaaagagcaagggaatctcccgttggaaagcttttccaaggcttagaaatatgc
tgctatgggccattcactgacatgctcccagaacaattggagtggatggtagagctgtcc
ggtgcctctattgtgaaagaacctcgcttattctcacattcaacaaagtctactgctgtg
gtggtcgttcagcccgaagcttggagcgaagacactgcctgccaagggatcccaccgcaa
tgcagtgctactgtagtctcacgagagtggatgctggacagtattgcatgctatcaacgc
caggcatttgacgaatacatcgtgcaacaggtgtga
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integrated database retrieval system
