Podarcis raffonei (Aeolian wall lizard): 128402340
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Entry
128402340 CDS
T09310
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128402340 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128402340 (SMG6)
03032 DNA replication proteins [BR:
praf03032
]
128402340 (SMG6)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128402340 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
128402340 (SMG6)
DNA replication proteins [BR:
praf03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128402340 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
128402340
NCBI-ProteinID:
XP_053222320
LinkDB
All DBs
Position
15:479680..572362
Genome browser
AA seq
1400 aa
AA seq
DB search
MAAAAELERVRVSAAELRRGVLAAEAARGSGGPETTKEPRHRKDNRRPDLEIYKPGLSRL
RNKLSFSAKQEEAKGGALTGDKGAPLAPSKEESPAPQDPPRGSSQQQPNGLLEGTAEAAA
PQDPGVSLEDWCPRIIRRAKKPDQQIYQPGKRLQVPSKEPAAPQLAAEEPPAKGERGEEP
ERDAGKGYRKPAAPEGQEGGLSQEGAKLLRGGEKGRRAERVRKGGEEAAAQSKAQSTPKR
YSRSDKRRNRYRTCSTSSAGSNNSADGARGEAEAGRKRQEPPKERPRPRKQLSASSTDSL
DEDKAEEEEAEAARGSSRDSEAAKRRLEHSWLSRGAGGREAKGAPAGGRGSGRGEPSEAE
WRKRKPSEASLSDSTEAAEVGKGSSSREPQGRGRGILVLPANTDLTASGAGSPEAPHSGP
RLLFSGGLGKGTRGRGRGGTARRLWDPNNPEQKPALKSQASQLHFLDTDDEAAPPPRGDT
RQAQASYYRFQNSDNPYYYGRAAGQAPSYPYAGYSLPYQVGAINGVYPGTYYPPGYPGQA
EPYLCSPLLAGPLSPEMEQQARSLQQQDLSKILREASNLEQQLSNLLSRDRLSPEGLEKM
GQLRVEMLQLYKRCLLTDIEFADAQNVDQLLWKNAFYQVIEKFRQLLKDPLGENAQEIRT
KLLQILDEGSDFFDSLLQKLQATYQFKLEDYMDGMAVRSKPLRKVVKYALISAQRSLICQ
GDICRYREQSSDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRS
LAASNPILTAKESLMSLFEETKRKVEQVEQKKSPSRQSKGKKSAFRPSGDDATRLELWIH
PSHPHASQGHESGRDSEQDNGLGSLSPSDLNKRFVLSFLHAHGKLFTRIGMETFPAVAAE
VLSEFRVLLGHSPSPIGSTRLLQLMAINMFAVYNSQPKECLSEDCRSVIQEQATALGLSM
FAMLVKRCTALLRDVSPAAAQGQEGSEDDDIKVSSLPQDLKELLPSIKVWSDWMLGHSDT
WNPPPSTLELPRSVSVDVWATLADFCNILTAVNQSEVPLYKDPDEDLALLSLEEDRLLSG
FVPLLVAPQEPCYVEKSSDKVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPV
PDAMGKEAASQEGKQLEDQEEDVRIEAFEDDSEADGSGGELDIRELRAKKQALTRKVAEQ
QRRQDKIQAVLKDQAQVRQMELEIRPIFLVPDTNGFIDHLGSLVKLLDCRQFILVVPLIV
INELDGLAKGPESEHRGGGYARLLQERARKAVEFLEARFEKRDSYMRALTSRGNELESIS
FRSEDISRQQGNNDDLILSCCLHYCNDKAKDFMPANKDDPIRLLREVVLLTDDRNLRVKA
LTRNVPVRDIPTFLRWAQEG
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggagctggagcgcgtccgcgtctcggcggcggagctgaggaggggc
gtcctggcggcggaggcggcccggggcagcggaggaccagagaccacaaaggagcctcgc
caccgcaaggacaatcggcgccctgaccttgagatctacaagccaggcctctcccgactg
cggaacaagctcagcttctcagccaagcaggaggaggccaaaggaggcgccctgactggc
gacaaaggagctccccttgctcccagcaaggaagagtccccagcccctcaggaccctccc
agaggaagcagccagcagcagcccaacggcctcttggaaggcactgccgaggcagcggcc
ccacaagatccgggggtctcccttgaggactggtgtcctcgtatcatccggcgagccaag
aagcctgaccagcagatctaccagccagggaagcgcctgcaggtcccctccaaggagccc
gctgccccccagctggcggctgaggaaccccccgcaaagggggagcggggtgaagagccc
gaaagggacgctgggaagggctacaggaagccagcggcccctgaggggcaggaagggggc
ctgagccaggagggggccaagctcctccgtggcggggagaagggcaggcgggccgagcgg
gtccggaaaggaggtgaggaggcagctgcccagagcaaggcccagagcaccccaaagcgc
tactcgcgctcggacaagcggcggaaccgctaccgcacctgcagcaccagctcggctggg
agcaacaatagcgctgacggggcccgtggggaggcagaggccggccggaagcgccaggag
ccacccaaggagaggccccgtccccggaagcagctctccgcttcctccacggactctctg
gatgaagacaaggcggaagaggaggaggccgaggcagcccgtggctccagcagggactca
gaggcagccaagaggcgcctggagcacagctggctctcccggggcgccggcgggcgggag
gccaagggagccccagcgggcggcaggggcagcgggcggggggagccctccgaggcagag
tggcgcaagcggaagccctccgaggccagcctgagcgattccacggaggccgccgaagtg
gggaagggctcttccagccgggagccccagggcaggggccgtggcatcctggtcctcccg
gccaacacggacctcaccgccagtggtgccggctcccccgaagccccccactcagggccg
cggctcctcttcagcggcggcctgggcaaggggaccagggggaggggcagagggggcacc
gcccgccggctgtgggaccccaacaaccctgagcagaagcccgccctgaagagccaggct
tcccagctgcacttcctcgacacggacgatgaggcggcccctccgcctcggggggacacc
cgccaggcccaggcctcctactaccgcttccagaactcggacaacccctactactacggg
cgggcagcgggccaagccccctcctacccctacgccgggtactccctgccctatcaggtc
ggtgccattaacggggtttacccgggcacctattacccgccaggctacccggggcaggct
gagccctacctgtgcagccccctcctggctgggcccctcagccccgagatggagcagcag
gcgcgcagcctgcagcagcaggatctcagcaagatcctccgtgaagccagcaacctggag
cagcagctgagcaacctcctgtcccgggaccggctcagccctgagggcctggagaagatg
gggcagctcagggtggagatgctgcagctgtacaagcgctgcctgctgaccgacatcgag
tttgctgacgcccagaacgtggaccagcttctgtggaagaacgccttctaccaggttatc
gagaagttccggcagctgctcaaggatccccttggggagaacgcccaggagatccgcacc
aagctgctccagatcctggacgagggcagcgatttcttcgacagtttgctgcagaagctg
caagcgacgtaccagttcaagctggaggactacatggacggcatggctgtgcgcagcaag
cccctgcggaaggtggttaaatacgccctcatcagcgcccagaggagcctgatctgccaa
ggagacatctgcagataccgagagcaaagcagcgacacggccaactacgggaaggcccgc
agctggtacttgaaggcccagcacatcgcccccaagaacggacgcccgtacaaccagctg
gccctcttggctgtctacacgaggaggaagttggatgccgtctactactacatgcgcagc
cttgcggccagcaaccccatcctcactgccaaggagagcctcatgagcctcttcgaggag
accaagcggaaggtggagcaggtggagcagaagaagagccccagccggcagagcaaaggc
aagaagtcggccttccggccttctggggatgatgccacccgcctggagctctggatccac
ccctcgcacccccacgccagccaggggcacgagtccgggcgggactcggagcaggacaac
ggcctcggcagcctcagccccagcgatctgaacaaaaggttcgtcctgagttttctccat
gcccatgggaagctgtttaccaggattgggatggagaccttccctgctgtggctgctgag
gtcctgagcgagttccgggtgctgctggggcacagcccctcgcccatcggaagcacccgc
ctgctgcaactcatggccatcaacatgtttgctgtctacaactcccagcccaaagagtgc
ctctctgaagactgtcgctcggtgatccaggagcaggccacggccctggggctctccatg
ttcgccatgctggtcaagcgctgcactgctctgctgcgggacgtctccccagcagctgct
cagggccaggaaggctctgaggatgatgacatcaaagtctcctccttgccgcaggacctg
aaggaactgctgcccagcatcaaggtctggtcggattggatgctgggccactcggacacc
tggaaccccccgcccagcaccctggagctgcccagatcggtctcggtggacgtgtgggcc
accctggccgacttctgcaacatcctgacggccgtgaaccagtcggaggtgccgctctac
aaggacccggacgaggacctggccctgctcagcctggaggaggaccgcctgctctcgggt
ttcgtcccgctgctggtcgccccccaggagccctgctacgtggagaaatcctcggacaag
gtcattgcggcggactgcaagcgggtcactgtgctgaagtatttcctggaagccctctgt
ggccaagaagagccattgctggcattcaagggtggaaagtatgtgtcagtggcccccgtc
ccagacgccatgggaaaggaagcagccagccaagagggaaaacaactggaagatcaggag
gaggatgtccggatcgaggcttttgaggacgactcggaggccgacggcagcggcggagag
ctggacatcagggagctgcgggccaagaagcaagcgctgaccaggaaggtggctgaacag
cagcgccggcaagacaagatccaggcggtgctgaaggaccaggcccaagtgcggcagatg
gagctggagatccgccccatcttcctggtgccggacaccaacggcttcattgaccatctg
ggcagcctggtcaagctcctggactgccggcagttcatccttgtggtgcccctgattgtc
atcaacgagctggacgggctggccaagggccccgagtcggagcaccgcgggggcggctac
gcacggctgctgcaggagcgggcccgcaaggcggtggagttcctggaggcgcgctttgag
aagcgggacagctacatgcgagctctcaccagccgcggcaacgagctggagtccatctcc
ttccgcagcgaggacatctccaggcagcagggaaacaacgatgacctgatcctctcctgc
tgcctccactactgcaacgacaaggccaaggacttcatgccagccaacaaagatgacccg
atccggctgctgcgcgaggtggtgctgctgacggacgaccgcaacctgcgggtgaaggcg
ctgacccgcaacgtccccgtccgggacatccccaccttcctgcgatgggcgcaggagggc
tga
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