Podarcis raffonei (Aeolian wall lizard): 128404489
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Entry
128404489 CDS
T09310
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
128404489 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
praf03000
]
128404489 (KDM2B)
04121 Ubiquitin system [BR:
praf04121
]
128404489 (KDM2B)
03036 Chromosome and associated proteins [BR:
praf03036
]
128404489 (KDM2B)
Enzymes [BR:
praf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
128404489 (KDM2B)
Transcription factors [BR:
praf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
128404489 (KDM2B)
Ubiquitin system [BR:
praf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
128404489 (KDM2B)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
128404489 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
128404489 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
128404489
NCBI-ProteinID:
XP_053226178
LinkDB
All DBs
Position
16:38089614..38177070
Genome browser
AA seq
1262 aa
AA seq
DB search
MEAEKDSGRRLRSIGRRLYDEDDDLSDVEEIVSIRGFNLEEKLRSKMYRGDFVRPMEGKD
FTFEYVQREALRVPLIFRSKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQKGTEM
SMSQFVRYYETPEAERKKLYNVISLEFSHTKLANIVKRPNVVDLVDWVDNMWPRHLKERQ
TDATNTISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVLSGKQSDIFLGDRVELCQRIELKQGHTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLHIYEIEDRTRVQAKFRYPFYYEMCWYVLERYVFCVTQRSHLSKEYLKESMLI
DTTRKRSLDSFSSDSWVDMDDESCDVHTREEKDDCLEKIPKALADGSSSPNSIHSEGKEV
SGRKQKSTATRFLKRTLSNESEESVKSTPADYPKTPTGSPATEVSAKWTHLTEFELKGLK
ALVEKLESLPENKKCIPEGIEDPQSLLEDMKNILKEHADDDQNLAISGVPVVSWPKKNAK
NRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGG
PGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPG
CLKVRESDGVVNEELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKINR
ENKEVVPDATKRKVECEEPPRKKSDDHPKKSPVDPLLRRKSEEVHPRRKRKFEKPQEPAM
RKRLKLGKEEKLFRKKRRSWKATDDRAALVKPVRRFKQEPEDDLPEEPPKSKESDQSRSS
SPTAGPSSEGAESRDKKKFKIRRKTRLPNKELSKELSKELNQEIQKTENSLANENHQPIK
SEPESENEEPKRVLCPERPHRFSKGLNGTPRELRHQLLSSLRSSTPRAAARPLRSLSPPK
CIQMERHVIRPPPISPPPDSLPLDDGEAHVMQREVWMAVFSYLSHSELCLCMRVCKTWNR
WCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSGTNISKKQLSWLINRLPGLRDL
LLSGCSWIAMSALCSSSCPLLRTLDAQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRH
ITELCLSGLDITDASLRLIIRHMPLLSKLNLSYCNHMTDQSINLLTAVGTTTRDSLTEVI
LQDCNKVTDQCLSYFKRCGSICRIDLRYCKQVTKEGCEQFIAEMSVSIQFSQVEEKLLQK
LS
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgatcgatcggcaggaggctgtacgac
gaggacgacgacctctccgacgtggaggagatcgtcagcatccgcggcttcaacctggag
gagaaactgaggagcaaaatgtaccgcggagacttcgtgcgacccatggaggggaaagat
ttcacttttgagtatgtgcagcgagaagcacttagagtccccctcatcttccgaagtaag
gatggactgggaattaagatgccggacccagatttcactgtacgagatgtcaagctgcta
gttgggagccgtcggattgtggatgtaatggacgtcaacacacaaaagggcacagagatg
agcatgtcccagtttgtgcgatattacgaaaccccggaggcggaacgcaagaagttgtac
aacgtgatcagcctcgagttcagccacacgaagctggcaaacatcgtcaagcgccccaat
gtggtagacttggtcgactgggtggataacatgtggcctcggcatctgaaggagagacag
acagacgccaccaataccatttcagagatgaagtatccaaaagtaaaaaagtactgtctg
atgagtgtgaaaggatgcttcacagattttcacattgattttgggggcacttcagtttgg
tatcatgtcttccgtggagggaagatcttctggctgatccctccaactttgcagaaccta
gaactctatgaggaatgggttctctcagggaagcaaagtgatatctttttgggggacagg
gtggagctatgccaaagaattgaactgaaacaagggcacaccttcttcattccttcaggg
tggatacatgctgtctatactccagtagattccttggtgtttggtggaaacatcctgcat
agttttaacgttcccatgcagcttcacatctatgagatcgaggatagaacgagggtgcaa
gccaagttccgttaccctttctactatgagatgtgttggtatgttctggagagatacgtg
ttttgcgtgacccagcgctcccacctcagcaaagagtatctgaaagaatcaatgttaatt
gatacaacaaggaaacgcagcttagacagcttctcatcggattcctgggtagacatggat
gacgaatcgtgtgatgtccacacccgggaagagaaggacgactgtctggaaaaaatcccc
aaggccttggcggacggatcgtcttctcccaacagtatacattcagaagggaaggaggtt
tcagggaggaagcaaaaatctacagccacccgcttcctcaaaaggactttgtccaatgag
tcggaagaaagtgtaaaatctacaccggcagactatcccaaaactcccacgggctcccca
gctacagaggtctcggcgaaatggactcacctgacagagtttgaactgaagggtttgaaa
gcccttgttgaaaaacttgaatcccttccggagaataagaaatgtatacctgaaggcatc
gaggatcctcagtctctgctggaggatatgaagaacatcctgaaggagcatgcagacgat
gaccaaaatcttgccatttctggggtcccagtggtatcgtggcctaagaaaaacgcaaag
aaccgggccgtcgggagacccaaaggaaaattgggccctgcctcagccgtgaagcttgcg
gcgaatcggacaactgcaggagcacggaggaggaggacgcgatgtcgcaagtgcgaggcc
tgcctgcgcacagagtgtggcgagtgtcacttctgcaaggacatgaagaagtttggtggg
cctggcaggatgaagcagtcgtgcattatgaggcagtgcattgcgccggtgctgccccac
acggctgtgtgcctggtgtgtggggaagcagggaaagaagatacggtggaagaggaggag
ggcaagttcaacctcatgcttatggagtgttccatctgcaatgaaatcatacacccagga
tgcctcaaggtgcgggaatcagacggcgtcgtcaacgaagagttgcccaactgctgggaa
tgcccaaagtgcaaccacgctggcaaaactgggaaagcgtacaagcaaaagcgcggacca
gggttcaagtacgcgtcaaacctgcccggctctctgctgaaagagcaaaagatcaatcga
gagaacaaagaggttgtcccagatgccaccaagcggaaagtcgagtgcgaggagccccct
cggaagaagtccgatgaccatcccaagaagtctcctgttgaccctcttttgaggaggaag
tctgaggaagtccacccacggcggaaacggaaattcgagaagccccaagagcctgccatg
aggaagcggttaaaactaggcaaagaagagaagctgttcaggaaaaagaggcgatcgtgg
aaggccacagatgaccgagctgccctggtcaagccagtccggcgcttcaagcaggagcct
gaggacgacctcccagaggagcctcccaaaagcaaggagagtgaccagtctcgctctagc
tcccccacggcggggccaagctcagagggcgcagagtcccgagacaagaagaagttcaag
atccggcggaaaacccgcctcccaaacaaggagctgagcaaggagctgagcaaagagctc
aaccaggagatccagaagacggagaacagcctggccaatgagaatcaccagcccatcaag
tctgagccggagagtgagaacgaggagcccaagcgggtgctgtgccccgagcggcctcac
cgcttcagcaaaggcttgaatggaaccccccgagaactccggcaccagctcttgtccagc
ctccggagcagcaccccccgggcagctgcccggcctctccgctccctctcgccccccaag
tgcattcagatggaacgtcacgtcatccggccgccccccatcagcccgcccccagactcg
ctcccgctggatgatggggaggcccacgtcatgcaaagggaagtctggatggctgtcttc
agctacctcagccacagcgaactgtgtctctgcatgagggtttgcaagacctggaacaga
tggtgctgtgataaaagactgtggaccaaaatagacctaaaccactgtaaatccatcacc
cctctcatgctcagtggtattattaggaggcagccggtcacgcttgatttaagtgggaca
aacatatcgaaaaagcagctgagctggctcatcaacaggctcccaggtctccgagatctg
ctgttgtcggggtgctcgtggattgcaatgtctgctctctgcagttctagttgtccactc
ctccgaacactggatgcgcagtgggtggaaggcttaaaagatgcacaaatgagagatctt
ttgtcaccaccaactgacaacaggccaggccaaattgacaaccggagcaagctgcgccac
atcacagagctgtgcctgtctggcttggacatcactgacgcttccctgcgtttgattatc
cggcacatgcctctactgtccaagctcaacctcagttactgcaaccacatgacagatcag
tctattaacctgctaacagctgtgggaaccaccacacgggactccctaacggaagttatt
ttgcaagactgcaacaaggtgacagaccaatgtctctcctatttcaagcggtgtgggagc
atctgccggattgatctgaggtactgcaagcaagtgaccaaggaaggttgtgagcagttc
atcgcagagatgtctgtgagcattcagtttagtcaagtggaagagaaactgctgcagaag
ttgagttag
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integrated database retrieval system
