Podarcis raffonei (Aeolian wall lizard): 128404984
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Entry
128404984 CDS
T09310
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04622
RIG-I-like receptor signaling pathway
praf04623
Cytosolic DNA-sensing pathway
praf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128404984 (RIGI)
04623 Cytosolic DNA-sensing pathway
128404984 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128404984 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
praf04054
]
128404984 (RIGI)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128404984 (RIGI)
Pattern recognition receptors [BR:
praf04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128404984 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
Motif
Other DBs
NCBI-GeneID:
128404984
NCBI-ProteinID:
XP_053227106
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All DBs
Position
17:complement(22231033..22259574)
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AA seq
927 aa
AA seq
DB search
MSEEEKRSLLCYRHYIVETLKPVYVVSYMKDWLSDETVERIQSHKEKPTTAAGLFLDSIV
NLTEEGWFRGFLNALNTAGYTGLREAIENWDFEKIEKLEVHRKLLNRILPSLREIDPAQI
LFYLNDCLIHEEVEEIRQVKRNEGNAAGMRKLVECLCRSDKENWPKTFQLALEQAEFYDQ
SELWNLNEGSVENTCVEMRDEDEGACAVDINIQFSEEAESDNMSASPGSSSLGPCPRSVY
VPKEARSYQTELARPALSGKHTIICAPTGSGKTFVSIMICDHHLRNMPPGRKGKVVFLTT
KVPVYEQQKKVFEEYFKGKFSVAGLCGESAVGAPSDMVIEANDITIMTPQILVNCLNHGE
QASLSSFTLMIFDECHNTTGNHPYSVLMSKYLDLKFEQAATPLPQIVGLTASLGVGSAKS
LGETVEYICKICAMLNAEVISTVRENIKDLEEVVYKPQKLTCLVKKRPQNRFVTIIADMM
SATESLARKIYAIDALSHIKSRCFGTQKYEQWIVDVQKKCRVLQLPDKEEESRVCKALFI
YTEHLRKYNDALIINEDARTQDALAYLKEFFKNIRSGGFDEIEEKLTLDFEAKLPELCKD
AQDESNENPKLERVTFILEEEYRLNPQTRTILFVKTRALVAALKNWIEENPQLQHLKPDV
LMGRGKRNQETGMTLPNQKGVLDSFKTDGDSKMLIATSVADEGIDIAQCNLVLLYEYTGN
VIKMIQVRGRGRAKDSKCILVTSKKEQEENEKYNILKEEMMNQAIEKVQKWDEETFAQKI
SDLQKIQKKIQDSKKKEPQPKLETGKRKLLCGKCKAHACDVEDIRVLEVAHHTVIDKNFR
NRFTTRPHSKPVHWGHFEKKSKIYCSDAKCQHDWGIAVKYKAFEDIPIIKIESFSVYDVV
KGKQDYFRKWKDVNFALKEFDIKEMSD
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaggagaaacggagcctgctctgctatcggcattatattgtggagacgctg
aagcctgtctatgtcgtgagctacatgaaggattggctcagcgatgagactgtggagaga
atccaaagtcataaggagaagcccactactgctgcgggtttatttcttgactcgattgta
aatctcacggaagagggatggttccgtggattcttgaacgcgttgaatacagcaggttat
accggcctccgtgaagccattgaaaattgggattttgagaagattgagaagctggaagtt
cacaggaagttgctgaatcgaattctgccctctttgagggaaattgatccggctcagata
ctattctacctgaatgattgcctcatacatgaggaggttgaagaaattcgacaggttaaa
aggaatgaaggaaatgcagcgggtatgaggaagcttgtagaatgcctctgtaggtcggat
aaggaaaactggcccaagaccttccaactggcgttggagcaggccgaattttacgaccaa
agcgaactgtggaatttgaatgaaggtagtgtcgaaaacacctgtgtggaaatgagagat
gaagacgagggagcctgtgctgttgatatcaatatacagttttctgaagaagccgaatcg
gacaatatgagcgcgagtccgggttcctcgtcgttgggtccttgcccccgatcagtttat
gttccaaaggaggccaggagctaccagactgaacttgcccgacctgctctcagtggcaag
cataccatcatctgtgcccctactggttctgggaagacttttgtgtctattatgatatgt
gaccatcacctccgcaacatgcctcctggacggaaggggaaagtggtcttcctcacgact
aaagtcccagtatatgaacaacagaagaaagtctttgaggaatatttcaagggaaaattc
agtgttgcaggcctgtgtggggaaagcgcagtgggtgccccttcggatatggttatcgag
gcgaacgatatcaccatcatgacgcctcagattctcgtgaattgcctcaaccacggagag
caagcttccctctcgtcgttcacgctgatgatttttgacgagtgccacaacacgaccggg
aatcacccttacagcgtgttgatgtccaagtacttagaccttaaatttgagcaagccgca
acaccgctacctcagattgtaggactgacggcctcccttggagttggcagtgccaagagc
ctgggtgagacggtggaatacatttgcaagatctgtgccatgctgaatgccgaagttata
tcgacagtcagagaaaacataaaggacctggaggaagttgtctacaagccccaaaaattg
acttgccttgtgaagaaacgtccccaaaaccgctttgtcaccattattgcagacatgatg
tctgcaactgagagcctagcaagaaaaatctatgctatagatgctttgtctcacattaaa
agtcggtgttttggaacccagaaatatgagcaatggatcgttgatgtgcagaagaaatgc
cgagtgttgcagctgccagacaaggaggaagaaagccgcgtttgcaaggctctctttatt
tacacagaacaccttcggaaatacaacgacgccctcattatcaatgaagatgcacgcact
caagatgcactcgcttacctgaaggagttctttaagaatatccgaagtggaggctttgat
gaaatagaggagaagctgacattggattttgaagctaaattgccagagctgtgtaaagat
gctcaggatgaatccaatgaaaatcccaaattggaaagggtcacttttattctggaagaa
gaataccgcctcaacccgcagacacggactattctctttgtgaagacgagggcactagta
gctgcattgaagaactggatagaagagaacccccaacttcaacacctaaagccagatgta
ttgatgggccgtggaaaaaggaatcaggaaacaggtatgacactcccaaatcaaaaaggt
gtcttggactccttcaaaaccgatggggacagcaagatgctcatagctacatctgttgcc
gatgaagggatagatattgctcagtgcaaccttgttcttctgtatgaatatacgggcaac
gtcattaaaatgatacaagtccgaggacgcggaagagccaaagacagcaagtgcatcctt
gtgacgagcaaaaaagaacaggaggagaacgagaaatataacatcttaaaggaagagatg
atgaaccaagccattgagaaagtgcagaagtgggacgaggagacatttgcgcagaagata
agcgacttgcagaagatacaaaagaaaattcaagattctaagaagaaagagcctcagccc
aagctggagacgggcaagcggaaattgttgtgcgggaagtgtaaagcacacgcctgcgac
gtggaagacatccgggtgcttgaggtagctcaccacactgtcatagataagaacttcagg
aaccggtttacaacaaggcctcatagcaaacccgtccactggggtcactttgagaaaaaa
agcaagatatactgcagcgatgccaaatgccagcatgactggggcatcgcagtgaagtac
aaggcatttgaggacatacccataataaaaatcgagagcttttcggtatacgacgtggtc
aaggggaagcaggattatttccggaaatggaaagacgttaattttgcactgaaagaattt
gatattaaagaaatgtccgattga
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