Limnobaculum zhutongyuii: EKN56_16930
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Entry
EKN56_16930 CDS
T06157
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prag
Limnobaculum zhutongyuii
Pathway
prag03030
DNA replication
prag03410
Base excision repair
prag03420
Nucleotide excision repair
prag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EKN56_16930 (ligA)
03410 Base excision repair
EKN56_16930 (ligA)
03420 Nucleotide excision repair
EKN56_16930 (ligA)
03430 Mismatch repair
EKN56_16930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prag03032
]
EKN56_16930 (ligA)
03400 DNA repair and recombination proteins [BR:
prag03400
]
EKN56_16930 (ligA)
Enzymes [BR:
prag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EKN56_16930 (ligA)
DNA replication proteins [BR:
prag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EKN56_16930 (ligA)
DNA repair and recombination proteins [BR:
prag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EKN56_16930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EKN56_16930 (ligA)
MMR (mismatch excision repair)
DNA ligase
EKN56_16930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EKN56_16930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QBH97927
UniProt:
A0A411WP24
LinkDB
All DBs
Position
complement(3792055..3794076)
Genome browser
AA seq
673 aa
AA seq
DB search
MESLKQRLIELCEQLRHHEYLYHVLDSPEIPDAEYDRLMRELRDIETAHPEWITDDSPTQ
RVGAAPLSAFEQVTHEVPMLSLDNVFDEQSYLAFDKRLHDRLKRNEEITFCCELKLDGLA
VSLLYEDGRLVQGATRGDGTTGENITSNVRTIGAIPLRLTGENIPRRLEVRGEVFMPQSG
FEQLNEHARRNHEKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLIDGGELPDSHW
ERLMQFKRWGLPVSDRIRLCKGSQQVLDFYHQVQEQRPSLGFDIDGVVIKVDDLALQREL
GFVAKAPRWATAFKFPAQEQMTVLRDVEFQVGRTGAITPVARLEPVTVAGVTVSNATLHN
ADEIARLGLCIGDTVVIRRAGDVIPQVVGIIASERPSDAKEIVFPTECPVCGSSVEKLEG
EAVARCSGGLVCAAQRKEALKHFVSRRAMDVEGMGDKIIEQLVDKEYVHTPADLYRLSIG
ILSRLERMGPKSAQNLVEALEKSKNTTFARFLFALGIREVGETTAANLASHFGSLEALQA
ADMDALKTVQDVGEVVAKHTFNFLREEHNQKIINELTGPEIAIHWPAPVVIVAEEIDSPF
AGKTVVLTGSLSQMSRDDAKAKLIALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELDIP
VIDEAEMIRLLGV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcccttaagcaacgtttaattgaactctgtgaacaactgcgtcatcacgaatat
ttgtaccatgttcttgattctccagaaattcctgatgcggaatacgatcgtttgatgcgt
gaactgcgcgatatcgagactgcccatccggagtggataaccgatgattcaccgacgcaa
agagttggtgccgcaccgctgtctgcatttgagcaagtcacccatgaagttcctatgtta
tcgctggataacgtatttgatgagcaaagctacttagcttttgataaacgcttacacgac
cgtttaaagcgtaatgaagagataacgttttgttgtgaactgaagctggatggtttagcc
gtcagcttgctatatgaagatggtcgtctggtacagggagccacccggggagatggcaca
actggagaaaatattacttcgaacgtgagaacgattggggccattcctttacgtttgacc
ggagagaacatcccgcgtcgtcttgaagttcggggtgaggtttttatgccgcagtcaggc
tttgaacagctaaatgagcacgcgcgacgcaaccatgagaaagtatttgccaacccacgt
aatgccgctgcgggctctttaaggcaactggacccaaggattaccgctaaaaggccatta
acgttcttttgctatggtgtgggcttgattgatgggggagagcttcctgatagtcactgg
gagcgtttgatgcagtttaagcgctggggattaccggtcagcgatcgtattcggttgtgt
aaaggcagccagcaggtattagatttttatcatcaggttcaggaacaacgtcccagcctg
ggatttgatattgatggtgttgttattaaggtagatgatttagccctgcagagagagttg
ggatttgtggctaaagcccctcgctgggcaacggcatttaagtttccagcccaggaacag
atgacggtattacgtgatgtcgaatttcaggtagggcgtaccggcgcaataaccccggtt
gctcgtctggagccagttaccgttgctggcgtcactgtcagtaatgctactttgcataac
gccgatgaaattgcgcgtttaggactctgtatcggtgatacggtggtgattcgccgtgca
ggtgatgttatccctcaagttgtaggcattatcgcctcagagcgtccctcagacgcaaaa
gaaatcgtttttccaaccgaatgcccggtatgtggttcaagtgttgaaaagctcgagggt
gaagcggtagctcgttgtagtggtggtttggtttgtgccgcgcaaagaaaagaggctttg
aagcattttgtctctcgtcgtgcaatggatgtggaagggatgggagataagatcattgag
caattagtggataaagagtatgtccatacgccagctgatttataccgcctgtcaattggt
attctgagtcgccttgaacgtatggggccaaagtcagcgcagaatctggttgaagcactg
gaaaaatcaaaaaataccacctttgctcgttttctgtttgctttaggtatccgtgaagta
ggggaaactactgctgctaatcttgccagtcattttggttcccttgaggctttacaagct
gcagatatggatgcgcttaaaactgtacaggatgtaggagaggttgtggccaaacacacc
tttaatttcttacgtgaagagcataaccagaaaattattaacgaactaactggtcccgaa
attgcgattcactggccggcgcctgttgtgattgttgctgaagaaatagacagccctttt
gctggtaaaacagtagtgctgacaggctcacttagccaaatgtcccgggatgatgctaaa
gctaagttgattgctttaggggctaaggttagtggtagcgtatctaaaaaaacggatatg
gttatcgccggtgaagctgcgggttcaaaattagctaaagctcaggagttggatattccg
gtgatcgacgaggcggagatgattcgcttacttggtgtatag
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