KEGG   Pradoshia sp. D12: F7984_01885
Entry
F7984_01885       CDS       T06218                                 
Symbol
purN
Name
(GenBank) phosphoribosylglycinamide formyltransferase
  KO
K11175  phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
Organism
prd  Pradoshia sp. D12
Pathway
prd00230  Purine metabolism
prd00670  One carbon pool by folate
prd01100  Metabolic pathways
prd01110  Biosynthesis of secondary metabolites
Module
prd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP
Brite
KEGG Orthology (KO) [BR:prd00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    F7984_01885 (purN)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    F7984_01885 (purN)
Enzymes [BR:prd01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.2  phosphoribosylglycinamide formyltransferase 1
     F7984_01885 (purN)
SSDB
Motif
Pfam: Formyl_trans_N
Other DBs
NCBI-ProteinID: QFK70096
LinkDB
Position
356302..356883
AA seq 193 aa
MKKIAIFASGNGSNFQAIAEAVEKGKLYASIELLICDHPGAYCIDRAEKLNIPVLSFSPK
DFPLKEDYEQQILQELQAKEVEMIILAGYMRLIGSVLLRAYPNHIINIHPSLLPAFPGKN
AVLQAIEAGVEVTGVTVHYVDEGMDTGPIIAQRAVSIHKGESVEEIHRKIQQVEHNLYPR
IIEQLSNEQEEKV
NT seq 582 nt   +upstreamnt  +downstreamnt
atgaaaaaaattgctatatttgcatcaggtaatggcagtaactttcaagcgatagcagaa
gcggtggaaaaaggaaaattgtatgcctcgatagaattgctgatttgtgatcatccaggt
gcttactgtatagatagggcggaaaagttaaatattccggtattatccttttctccaaag
gattttcctttgaaagaggattatgaacagcaaattttacaggagttgcaggcgaaagaa
gtcgagatgattattttggcaggctatatgcgattaattggctcagtgctgttaagggcc
tatcctaatcacattattaatattcatccttctttattgccagcctttccaggaaaaaat
gccgttttgcaggcgatagaagcaggcgtcgaagtgacgggggttacggttcattatgta
gatgaaggcatggatacgggaccgattattgcacagagagccgtctcgatacataaaggg
gagagcgtggaggagatccacaggaaaattcagcaggtagagcataacctatatccacgc
attatagagcagttaagcaacgaacaggaggagaaagtatga

KEGG   Pradoshia sp. D12: F7984_01890
Entry
F7984_01890       CDS       T06218                                 
Symbol
purH
Name
(GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
  KO
K00602  phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Organism
prd  Pradoshia sp. D12
Pathway
prd00230  Purine metabolism
prd00670  One carbon pool by folate
prd01100  Metabolic pathways
prd01110  Biosynthesis of secondary metabolites
Module
prd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP
Brite
KEGG Orthology (KO) [BR:prd00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    F7984_01890 (purH)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    F7984_01890 (purH)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:prd04147]
    F7984_01890 (purH)
Enzymes [BR:prd01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.3  phosphoribosylaminoimidazolecarboxamide formyltransferase
     F7984_01890 (purH)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.10  IMP cyclohydrolase
     F7984_01890 (purH)
Exosome [BR:prd04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   F7984_01890 (purH)
SSDB
Motif
Pfam: AICARFT_IMPCHas MGS
Other DBs
NCBI-ProteinID: QFK70097
LinkDB
Position
356880..358412
AA seq 510 aa
MKKRALISVSNKEGIVEFAKGVTELGFEIISTGGTKKTLSDHGIPVISVSDVTGFPEIMD
GRVKTLHPYIHGGLLGKQNDESHMAQLEEQGIAPIQLVCVNLYPFQETIAKPGVTVEEAI
ENIDIGGPAMLRASAKNHESVAVVVDPADYGKVLNGFRNGELSLLDRRKLAAKVFRHTAA
YDSLIAEYMTNLAEEDQPENYTVTYTLKQPLRYGENPHQKAAFYAKPLGSTFSIAAARQL
HGKELSYNNINDADAALQIVKEFEQPAAVAVKHMNPCGAGTGDTIYEAFQKAYEADPTSI
FGGIVALNREVDAETAKLLHEIFLEIVIAPSFTDEALEVLTSKKNIRLLTIQFEGREKRE
KKLSSITGGLLVQESDEATIQDAELQVVTKREPTEAEWKALQFGWKLVKHVKSNAIIVTD
EQMTLGVGAGQMNRIGAAKIALEQAGEKARGAIIASDAFFPMDDTVEAAARAGITAIIQP
GGSKRDEDSIKKADEYGIAMVTTGVRHFKH
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgaaaaagcgggcattgatcagtgtatcaaacaaagaggggattgtagaattcgccaaa
ggagttacggagctgggctttgagattatttccacaggtggaaccaaaaaaacattgtcg
gatcatggtattccagttatcagcgtcagtgacgtgacaggttttccggaaataatggat
gggcgcgtaaaaactttacatccctatattcatgggggtctccttggaaaacaaaacgat
gaatcccatatggctcagcttgaagaacaagggattgctcctattcagctagtttgtgtg
aacctttatccattccaagaaacgattgctaaaccaggcgtgacagttgaagaggcaatc
gagaatattgatattggcggtcctgcaatgctgagggcctctgctaaaaaccatgagtct
gtagcagttgtggtggatcctgctgactatggaaaagtacttaatggtttccgtaatgga
gaactttccttattggatagaagaaagctggcggcaaaggtttttcgccatacagcggct
tatgattccctgattgctgaatacatgacaaatttggcagaagaggatcagcctgaaaac
tatactgttacatacacgttaaagcaaccacttcgctacggtgaaaaccctcatcaaaaa
gctgcgttttatgcaaaaccacttggctctactttttcaattgcagcagccaggcagctg
catggtaaggaattatcctataacaatatcaatgatgcagatgctgccctgcaaatcgtg
aaggaatttgaacagccggctgctgttgctgtgaagcatatgaatccttgcggcgcagga
actggagacactatttatgaagcattccaaaaggcatatgaagcggatcctacatctatc
tttggcggtattgttgcgttaaatcgggaagtagatgctgaaacggcgaaactgcttcat
gaaattttcttggaaattgtgattgccccatcatttactgacgaggcattagaggtctta
acatctaagaaaaatattcgcttacttactattcaatttgagggaagagagaaaagggag
aaaaaactatcttccattacaggcggtttacttgtccaagagtcagatgaggcaactata
caggatgcagagcttcaggttgttacaaaaagagaacctactgaagctgaatggaaagct
cttcaatttggatggaaactcgtaaagcatgttaaatcaaatgcaatcatcgtaacagat
gagcaaatgacactgggagtaggtgctggtcaaatgaatcgtatcggcgctgcgaagatt
gccttagaacaggctggtgaaaaagcgagaggcgccattatcgcatcagatgcattcttt
ccaatggatgacacagtggaagccgcggccagagccgggattaccgctatcattcagcca
ggcggatcaaagcgagatgaggactctataaaaaaagcagatgagtatggtattgcgatg
gttactaccggagtacggcatttcaaacattaa

KEGG   Pradoshia sp. D12: F7984_06560
Entry
F7984_06560       CDS       T06218                                 
Name
(GenBank) methionyl-tRNA formyltransferase
  KO
K00604  methionyl-tRNA formyltransferase [EC:2.1.2.9]
Organism
prd  Pradoshia sp. D12
Pathway
prd00970  Aminoacyl-tRNA biosynthesis
prd01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:prd00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    F7984_06560
Enzymes [BR:prd01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.9  methionyl-tRNA formyltransferase
     F7984_06560
SSDB
Motif
Pfam: Formyl_trans_N Formyl_trans_C KOW7_SPT5 MSSS
Other DBs
NCBI-ProteinID: QFK70930
LinkDB
Position
1331699..1332640
AA seq 313 aa
MTRIIFMGTPDFSVGVLERLINDGYEIVGVVTQPDRPVGRKRILTPPPVKVTAEKHGIPV
LQPEKIRVDSEVDKVLALNPDLIVTAAFGQILPNRLLEAPKYGCINVHASLLPELRGGAP
IHYAIMQGKEKTGVTIMYMVEKLDAGDMLSKVEVPIEETDHTGSLHDKLSKAGAQLVSET
IPKLLNGEITPIKQNEEDATFAFNIKREQELIDWAQGGEEVYNHIRGLHPWPVAYTLLNG
TVLKVWWGEKVKTAKQGSAGEVLDIEKDGFVVKTGNDTAIKITDLQLAGKKRMTAEQMLR
GTAIISTGMKLGE
NT seq 942 nt   +upstreamnt  +downstreamnt
atgactagaataatatttatgggaacacctgatttttctgtcggtgtattagaacgttta
ataaatgatggatatgaaatcgttggtgtcgtaacccagcctgaccgtccggttggacgg
aaacgcattttgacaccacctcctgtaaaggtgacagccgagaaacatggtattccagtt
ctccagccagaaaaaattcgtgtggattcagaagttgacaaggtacttgctttaaatcca
gacttaattgttaccgcggcatttggacaaatcctgccgaatcgtttattagaggctcca
aagtatggttgtataaacgttcatgcctccttactgcctgaattacgtggtggtgcacct
attcactatgcaatcatgcaagggaaagaaaaaacaggtgtaaccattatgtacatggta
gaaaagctggatgcaggtgacatgctgtcaaaagtagaagttccaattgaggaaactgac
catacaggcagtttacatgataaattgagtaaagctggtgcacaactggtttctgagacc
attccaaaattattgaatggagaaatcactccaattaaacaaaatgaggaagatgctacc
ttcgctttcaatattaaaagagaacaggaattaatcgattgggcacaaggcggagaagag
gtttataaccatatccgcggtttacatccatggcctgtagcctatactttgttaaatgga
acagttttaaaggtttggtggggcgaaaaagtgaagaccgccaagcaaggtagtgccggt
gaagtgcttgatatcgaaaaagatggtttcgttgtgaagacaggaaatgatacagcaatc
aaaattactgatttacaactagctggtaaaaagagaatgactgctgaacagatgctccga
ggtactgcaatcatatcaacaggaatgaaattgggagaataa

KEGG   Pradoshia sp. D12: F7984_11125
Entry
F7984_11125       CDS       T06218                                 
Name
(GenBank) formate--tetrahydrofolate ligase
  KO
K01938  formate--tetrahydrofolate ligase [EC:6.3.4.3]
Organism
prd  Pradoshia sp. D12
Pathway
prd00670  One carbon pool by folate
prd00720  Other carbon fixation pathways
prd01100  Metabolic pathways
prd01120  Microbial metabolism in diverse environments
prd01200  Carbon metabolism
prd01240  Biosynthesis of cofactors
Module
prd_M00140  C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:prd00001]
 09100 Metabolism
  09102 Energy metabolism
   00720 Other carbon fixation pathways
    F7984_11125
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    F7984_11125
Enzymes [BR:prd01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.4  Other carbon-nitrogen ligases
    6.3.4.3  formate---tetrahydrofolate ligase
     F7984_11125
SSDB
Motif
Pfam: FTHFS CbiA DUF948
Other DBs
NCBI-ProteinID: QFK71739
LinkDB
Position
complement(2326865..2328553)
AA seq 562 aa
MNLDTIVKSDIEIALNAKMKPIKEIAETIGLKEEDWEAYGKYKAKISLDVLKSRSTKKDG
KLILVTSINPTKAGEGKSTVTVGLGDAFSLLGKKAMIAMREPSLGPVMGVKGGATGGGYS
QVLPMDEINLHFTGDLHAITTANNALAALIDNHIQQGNELQIDPRKIIWKRVLDMNDRAL
RHIVIGLGGDKHGIPREDGFDITVASEIMAILCLAIDLDDLKDKLGKIVIGYTYQDTPVS
VSDLGVEGALTLLLKDALKPNLVQTIEHTPTLIHCGPFANIAHGCNSVLATKTALKLADY
CVTEAGFGADLGGEKFLNIKTSAADLTPDAVVIVATLRALKMHGGVQSDKLKEENLNAIE
LGFQNLVKHCETIQAFGLPFIVALNKFSADTDAEVERFNTLCQKHGLPFSLTEVWEKGGQ
GGLDLAAKLEDLMKENTNTFKRLYESTDSIQEKIEKVAKIVYGAQKIEYSPEALQQIHKY
ESEGWGQLPVCMAKTQYSLSDNPSLLGRPEGFTLYIKKLKPSVGAGFIVVLTGDIMTMPG
LPKRPAALKMDVDENGNAVGLF
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgaatttggacacaattgtaaaaagtgatatcgagattgctttaaatgcaaaaatgaaa
cccataaaagaaattgctgaaacgattggattaaaggaagaagattgggaagcttacggg
aaatacaaggcgaaaatctctcttgatgtgttaaaatcccgcagcaccaaaaaggatggg
aaattaattctcgttacttccatcaatcctactaaagcaggggaagggaaatcaacggta
accgttggtctaggagatgcgttttctcttcttggaaagaaagcaatgatagcgatgaga
gaaccttctcttggaccagtcatgggtgtaaagggaggtgcaactggcggcggttattca
caggtactcccaatggacgaaattaacctgcactttactggtgatttacatgccatcaca
acagcaaataatgcactggcagctctgattgataatcatattcagcagggaaatgaactg
cagattgacccgcggaaaattatttggaaaagggtccttgatatgaatgaccgtgccctt
cggcatattgtaatcgggcttggcggggataagcacggaattccccgtgaagatggcttt
gatataaccgtagcatctgaaatcatggcaattctttgtctcgcgatagatttagatgac
ttaaaagataaattagggaagattgtgattggatacacctatcaggatacacctgtttct
gtttcagacttgggtgtagagggtgcactaactttattgttaaaggatgctttaaagcct
aatttggttcaaactattgaacatacgcctactctaattcattgtggtccgtttgcaaat
attgcacatggatgcaacagtgtacttgctacaaaaacagcccttaagctagctgattat
tgtgttacagaagcaggatttggtgcggaccttggcggagaaaaattcttgaatattaag
acaagcgctgctgatcttactccggatgctgtcgttatcgtggcaacattaagagcctta
aagatgcatggtggcgtacaatcggataaattaaaagaggaaaatctaaatgcgattgaa
ttagggttccagaatttagtgaagcattgtgaaacgattcaagcttttggattgcctttt
atcgtcgctttaaataaattttctgcagatactgatgcagaggtggaacgattcaatact
ttatgtcagaaacatggattacctttctctttaacagaagtgtgggaaaaaggtgggcag
ggcggattggaccttgcagcaaaacttgaagaccttatgaaggagaataccaatacattt
aaacgtctatacgaatcaacggattccattcaagagaaaattgaaaaagtcgcaaaaatt
gtatatggggcacaaaagattgaatattctcctgaagctctgcaacaaatacataaatat
gaatcagaaggatgggggcagctccctgtttgtatggctaaaacccagtattcattatcg
gacaatccaagtttgttgggcaggcctgaaggatttacattgtatatcaaaaagctaaag
ccttctgtaggagcaggttttattgtggtacttactggagatattatgacaatgcctgga
ttacctaaaagaccagctgctttaaagatggatgtcgacgagaatggcaatgcggtcgga
ttgttttaa

KEGG   Pradoshia sp. D12: F7984_18510
Entry
F7984_18510       CDS       T06218                                 
Symbol
purU
Name
(GenBank) formyltetrahydrofolate deformylase
  KO
K01433  formyltetrahydrofolate deformylase [EC:3.5.1.10]
Organism
prd  Pradoshia sp. D12
Pathway
prd00630  Glyoxylate and dicarboxylate metabolism
prd00670  One carbon pool by folate
prd01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:prd00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    F7984_18510 (purU)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    F7984_18510 (purU)
Enzymes [BR:prd01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.10  formyltetrahydrofolate deformylase
     F7984_18510 (purU)
SSDB
Motif
Pfam: Formyl_trans_N ACT ACT_6 ACT_4 ACR10_N
Other DBs
NCBI-ProteinID: QFK73079
LinkDB
Position
complement(3855882..3856781)
AA seq 299 aa
METIAEKHVNLYKESQRDKGRLLISCPDKKGIVAAVSDVLFKQGANILESNQYSTDSNGG
TFFMRIEFECPDLADNEKKLKEEFLSIANKFKMKWDIIFNYHIKKTAIFVSKELHCLREL
LWEWQSGDLMTEIPIVISNHLAAKELVESLHIPFYYIPVSKETKEDAELRQKELLDKHQI
DLIVLARYMQILSPSFVEMYENKIINIHHSFLPAFMGARPYERAFARGVKLIGATSHYVT
DDLDEGPIIEQDIMRVNHQDNIQQLKKIGQSIERNVLSKAVKWHLQDRIIVQGNKTIVF
NT seq 900 nt   +upstreamnt  +downstreamnt
atggaaacaatcgctgaaaagcatgtaaatctgtataaagagagtcagcgagataaaggg
cgcctgctaattagctgtccggacaaaaaaggaattgtggcagcagtatctgatgtcttg
tttaaacaaggcgctaacatcctggaatcaaatcaatattcaacagacagtaatggcggt
acgttttttatgaggattgaattcgaatgtcctgatctggctgacaacgagaagaaacta
aaagaggaatttctttcaatagcgaataagtttaagatgaagtgggatataatctttaac
tatcacataaagaaaacggctatatttgtttcaaaggagcttcattgtttaagagagctg
ctatgggagtggcaatcaggggatttaatgacagagattccgatcgtaatcagtaaccat
ctggctgctaaagagctggtagaatcgctgcacatccctttttactatatacctgtgtcg
aaggaaacaaaggaagatgcggagttaaggcagaaggagctgctcgataaacatcaaatc
gatctaatcgtgttagcgcgctatatgcaaattctttcgccaagctttgttgaaatgtat
gagaataaaatcattaatattcatcactcctttttgccagcgtttatgggagcacgaccg
tatgaaagagcgtttgcacgtggggttaaattaattggagcaactagtcattatgtaaca
gatgatttagatgaagggcccatcattgaacaggatattatgcgggttaatcatcaggat
aatattcagcaattgaagaaaataggacaatccattgaaagaaatgtgctcagcaaagct
gtgaaatggcacttacaggacaggattattgttcaggggaataagacaattgttttttag

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