Metapseudomonas resinovorans: PCA10_19370
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Entry
PCA10_19370 CDS
T02708
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pre
Metapseudomonas resinovorans
Pathway
pre03030
DNA replication
pre03410
Base excision repair
pre03420
Nucleotide excision repair
pre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCA10_19370 (ligA)
03410 Base excision repair
PCA10_19370 (ligA)
03420 Nucleotide excision repair
PCA10_19370 (ligA)
03430 Mismatch repair
PCA10_19370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pre03032
]
PCA10_19370 (ligA)
03400 DNA repair and recombination proteins [BR:
pre03400
]
PCA10_19370 (ligA)
Enzymes [BR:
pre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PCA10_19370 (ligA)
DNA replication proteins [BR:
pre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PCA10_19370 (ligA)
DNA repair and recombination proteins [BR:
pre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PCA10_19370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCA10_19370 (ligA)
MMR (mismatch excision repair)
DNA ligase
PCA10_19370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PCA10_19370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAN47669
UniProt:
S6BF36
LinkDB
All DBs
Position
2098761..2101133
Genome browser
AA seq
790 aa
AA seq
DB search
MTDAQTAANRIHALRAELDAHNHRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPES
PTQRVGGEALSEFGEVRHEVPMLSLGNAFEEEDLRAFDRSVQGGLGLSAGDLFGGGAEVE
YSCEPKLDGLAVSLLYRNGQLVRGATRGDGSTGEDISSNVRTIRNVPLKLQGEGWPELLE
VRGEVYMPKAGFDELNVRQAESGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQ
VSGELPATQVGMLQQLKAWGVPISRELKLAKGVEQCLAYYRDIGERRMDLPYDIDGVVFK
VNNIEDQQQLGFRARTPHWALAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAG
VTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVAERRPADARPVHIPEQCPV
CGSAVERTQLVKRSKGKATTSEGSVYRCVGRLACAAQLKQAIIHFASRRALDIEGLGDKI
VEQLVDTGLVASPADLFTLAYDQVVALEGFADLSTRNLINAIKDSSKPTLARFIYALGIP
DVGEETAKVLARALGSLARIRKALPEVLTYLPDVGLEVASEIHNFFADEHNQQVIEALLA
RGLSLQEEGDLNPEFAACATLPGFIDKLNIPFIAATGAEKLAAKFGTLEGIIKADWLDLR
QVERLNEKAAKSLRDFFDNPANAQRAALIEAQLREFGMHWESEKKTIEGLPLAGQTWVLT
GTLELMSRDVAKEKLEALGAKVAGSVSARTHCVVAGPGAGSKLAKANELGVRVLDEEAFL
VELKGLGVAL
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgcccaaaccgccgccaatcgcatccacgcgctgcgtgccgagctggatgcg
cacaaccatcgctactacgtgctggacgagcccagcgtgcccgatgccgagtacgaccgc
ctgttccgcgagctgcaggccctggaggccgagcatccggagctggtgacgccggagtcg
ccgacccagcgcgtgggcggcgaggcgctcagcgagtttggcgaggtccgccacgaagtc
cccatgctcagcctgggcaacgccttcgaggaagaggacctgcgcgccttcgaccgcagc
gtgcaaggcgggctcggtctttcggccggcgacctgtttggcggcggcgccgaggtggag
tacagctgcgaacccaagctcgatggcctggcggtcagcctgctgtaccgcaacggccaa
ctggtgcgcggcgccacccgtggcgatggcagtaccggcgaagacatcagcagcaacgta
cggaccatccgcaatgtgccgctgaagctgcagggcgagggctggccggagctgctcgaa
gtgcgcggcgaggtctacatgcccaaggccggcttcgacgaactcaacgtgcgccaggcc
gaaagcggcggcaagacctttgccaacccgcgcaacgccgccgccggcagcctgcgccag
ctggacccgaagatcaccgccagccggcccctggagttctgctgctatggcgtcggccag
gtcagcggcgaactgcccgcgacccaggtgggcatgctccagcagctcaaggcctggggc
gtgcccattagccgcgagctgaagctggccaagggcgtggagcagtgcctggcctactac
cgcgatatcggcgaacggcgcatggacctgccctacgacatcgatggcgtggtgttcaag
gtcaacaacatcgaagaccagcagcagctgggcttccgcgcgcgcaccccgcactgggcg
ttggcgcacaagttcccggcccaggaagagctcaccgagttgctggacgtggaattccag
gtcggccgtaccggcgccgtaaccccggtggcgcggctcaagccggtgaaggtggccggc
gtgaccgtggccaacgccaccctgcacaacatggatgaagtggcgcgcctgggcctgatg
atcggcgacacggtaatcatccgtcgcgccggcgatgtgattccccaggtcatgcaagtg
gttgccgagcgtcgcccggccgatgcccggcctgtgcacatccccgagcagtgcccggtg
tgcggctcggcggtggagcgcacccaactggtcaagcgcagcaagggcaaggccaccacc
agcgagggttcggtataccgttgcgtcggtcgcctggcctgcgccgcccagttgaagcag
gcgatcatccacttcgcctcgcgccgtgccctggacatcgaaggcctgggcgacaagatc
gtcgagcaactggtggacaccggcctggtcgcctcgccggccgacctgttcaccctggcc
tatgaccaggtggtggcgctggagggtttcgccgacctgtccacccgcaacctgatcaac
gccatcaaggacagcagcaagccgaccctggcgcgcttcatctatgccctgggcattccc
gatgtgggcgaggagaccgccaaggtgctggcccgcgccctgggctccctggcgcgcatc
cgcaaggcgctgcccgaggtgctgacctacctgcctgacgtgggcctggaagtggcgtcg
gagatccacaacttcttcgccgacgagcacaaccaacaggtgatcgaagccctgctggcc
cgaggcctgagcttgcaggaggagggagacctcaaccccgagttcgctgcctgtgcgacg
ctgccgggtttcatcgacaagctgaacatccccttcatcgccgccaccggcgccgagaag
ctggcggcgaagttcggcaccctcgaaggcatcatcaaggccgactggctcgacctgcgc
caggtcgagcggctcaacgagaaggcagcgaagtcgctgcgcgatttcttcgacaacccg
gccaatgcccagcgcgcggcgctgatcgaagcgcagctgcgtgaattcggcatgcactgg
gagagcgagaagaagaccattgaagggctgcccctggccgggcagacctgggtgctcacc
ggcaccctcgaactgatgagccgcgacgtcgccaaggagaagctggaggcgctcggtgcc
aaggtcgccggttcggtatcggcgcgtacccactgcgtggtggccgggcccggggcgggc
tccaagctcgccaaggccaatgagctgggcgtccgcgtgctggacgaagaggcgtttctc
gtcgagctcaaggggttgggcgtggcgctctga
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integrated database retrieval system
