Poecilia reticulata (guppy): 103456865
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Entry
103456865 CDS
T05149
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pret03036
]
103456865
03400 DNA repair and recombination proteins [BR:
pret03400
]
103456865
Chromosome and associated proteins [BR:
pret03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103456865
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103456865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Psb28
Motif
Other DBs
NCBI-GeneID:
103456865
NCBI-ProteinID:
XP_008394908
LinkDB
All DBs
Position
LG20:complement(22604355..22625874)
Genome browser
AA seq
1952 aa
AA seq
DB search
MINVYNYLPKYQQGSKKTLKLGLDLADFLVLVYREFGLPPWQKFCLVTTDRTVVDHVKFK
ELQDNSTLYLLQSEDQDLPVAAEEVINFVPHYNTLIESGTFEYFAEGQKSLPCSLAELVD
NSLSATAKNTGVRTIEIRLLFDKTFAVVVLDNGCGMTSKQLNNWAVYRLSKFTRENSTFE
SEREDYTRPEPVRRSLNSDISYFGVGGKQAAFHIGNSVRMISKPRSSPDVHELALSKDEF
EKKEKNKEDVYKGTILNRKPGDFSHITHEERYLQDIIKEETRKESFTAVVITGVCPDHIS
YLKDDFHEWTRQLAHIYHYYIHGVDGNHKMDQSQKSDVSPKIDILVTLREKPPKGLRQKN
LREVQDDLQTLYINSAVDTFEFKATTSDGGSLDGILRYHPFLYDKETFPQELHALQAPVE
EEDDENQSGTMNRARGKRDIFECFWNGRLIPYTTVSEFDWCRRPPKSTLPLECFSRFSGV
LFTNDKFRVNASKQKFMDLELKLRHKDTLFTPVFNVQKASKHRNIQKEFLQWLEKCHSQF
DKQVKFLGYVDTVKRPDVSIKKSQSPWAVFSAIELDGKIYKAGDLVKSKKTQPIYYGKVN
KFFLYGDHEGDVFATGGEVEITRVPEALYDYYTRTIPISKIDRSATIESIKRCIETDIDK
LPEKLCVKWPEGNPLPKNAVIPAGTPLGPLAVEIVNRNEKSISSRIQTGVQGGGIKLNVG
LKIFFHGPKEVKQPKNVCDLSAKYVPGHGHWFKKNGSLTNLGKYTLTLQAELSENSKTSY
GGRQLPSYKHKFTVKEGNAEIFTIGPLNPSLRIGMPFNIPTQMTDIYGHPTKPPPNIQPV
LECSDLEVSFETTATSGNSFTIEGVKVIGEVQNYQQTRSFDLKLTLPGLKKQTQTIKISP
FPGNPHSLLVKPEVKPVKVENGNPVSFNVEVRDEAGNITANAKQIVRCQVPGLKLAVTDC
SSTGTGQIVTEPINLKIINGEPQMLQAKFDMPSQKHVVAITTELKVMPSCRVSWMELFCE
GEERLELKNEEKIQWQAGGVLENLVFKLYDESGKEVEVTPEIASNIKVNWTGVIDQRALI
MGRLPDVQVPTKVQEERFHQVSYRDHSVSFSFTIVPCPDEPARLKATVSENTVKLGETVT
APIKLKLVDHYDNVTNSLTSDCVTSMAVEAEGLDKSNIAFIWEESSGSVKVSGVRFTSGP
LGTREVCFSYGDYTEQINFKVMAGIPTKLKLLSGPEMPLQILNGTGISTPFVVQLCDEWE
NPSPDQRVVVETRASPSTAKVTTSVTSQPVDAEGKAAFTVTNVKGLKGYYQLEFFGCFNR
KPIPGPHVNFNIIPDPNKPDKLSVNYDTSARFLAGGTFPVFSVAVLSDAGSAMTAFKSAD
LFMWYWSGESLTRPKTATVLMCSKPMENDSKSCYYFRDKKIPQSVGTYTVQFSLRIEKTE
VVFSNQIIVNVVANQPVKLGPECQPQIPVVSYSRDIANRTLVENMTLKIMDQYGNPTGQN
LNGKVLVSIKCPDGEQSTNLPLLEEVSTVEINLKDGSTHIERLAIRESSPGENGRRYILI
FKPEVVMPPSSLSPFELPFHFYNDSENQRKVSELTKKKDELSDNYEKLNKKCSLLARLRE
LLTKNVLDANKKEEALKKVLEESRIQVLQPSSIQNIDSLLQQNADEKKTIEDIPRRVFPM
ANRSGPDILGKVGHLAHISDEKAALVISWHLSSEMDCVITKTTAEAQRIFRSEYGRQQVM
ALDSIYVNPRSQGPLPHIKNGRELFSPVGNPLYARNLLIYTAEEESCEHVFKNILGNTIL
MDDIESATNYRKAVIQKGIYCPTILTRDGNRLSASGKFGGAQNKAPHEDMVKKFGTPLPQ
RYYELQKERELLIQFRSALEKKKDEDDKRNNTILKLSETRQEMEETKTELQEIERQLASV
RSGKRGPEDISDPSGLMIKRPRRRSKDTPERF
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atgattaatgtgtacaactatctacccaaataccagcaggggtcgaagaaaactctgaaa
ctcggtttggatctagccgactttcttgtacttgtatacagggaattcggtcttcctcca
tggcaaaaattttgtttggtaacaacagacagaacagttgttgatcatgtcaaatttaag
gagcttcaggataacagcaccctctacttgttgcaaagcgaggaccaagaccttccagtg
gcagctgaggaggtcatcaactttgttcctcattacaacacgctaatcgagagcggaaca
tttgagtactttgccgagggccaaaaatcactgccctgctctctcgctgagctggtggac
aactctctttcggctaccgctaagaacacaggagtcaggacgatagagatccggctgctt
tttgacaaaacatttgctgtcgtcgtgttggacaatggctgtgggatgacctccaagcag
ctcaataactgggctgtttacagactctctaagttcacaagggaaaacagcacatttgaa
agtgaaagagaggattacactcgtcctgaacctgtacgtcgcagtctcaacagcgatata
tcctactttggagttgggggaaaacaagcagcgttccacattggaaactcagtcagaatg
atcagcaaaccaaggagctctccagatgttcatgagctggctctatcaaaggacgagttt
gagaaaaaagagaagaacaaagaggatgtttacaaagggaccatcttaaacaggaagcct
ggtgacttctcgcacataacacacgaggagcgctaccttcaggacatcatcaaggaggaa
accaggaaggaaagcttcactgctgttgttataacaggagtctgtcctgatcacatcagc
tatctaaaagatgattttcacgagtggaccagacagctagcgcacatttatcattattac
attcatggagtggacggaaaccacaaaatggaccagtctcaaaaatcagacgtcagtcct
aaaattgatattctggtaactttgcgggagaaacctcctaaaggtttgcgccagaagaat
ctcagagaagtgcaggatgacttgcagaccctgtacataaactcagctgtagacacattt
gagttcaaggccaccacttcggacggcggctccttggacggaatcctgagatatcatcca
tttctttacgacaaggagaccttcccccaagagctgcatgctcttcaagcacctgttgag
gaagaagatgatgaaaatcagtctggaaccatgaatcgagccagagggaagagggacatc
tttgagtgtttctggaatggacgactcatcccttacaccacagtttctgagttcgattgg
tgccgtcgccctcctaaaagtacattgcccctggagtgtttcagccgcttctctggggtg
cttttcaccaacgacaaattccgagtcaatgcaagcaaacagaagtttatggacttggag
ctgaaactgaggcacaaggataccctcttcacccctgtttttaacgttcagaaagcctca
aaacatcgaaacatccagaaagagttcctgcagtggcttgaaaaatgtcacagtcagttt
gataagcaggtaaagttcctcggctatgtggacactgtgaaacgacccgatgtgtccatc
aagaagtcgcagtctccctgggcagtgttctctgctattgaattggatggcaaaatatac
aaagcaggggatcttgtgaaatctaagaaaactcagccgatttattacggcaaagtgaat
aaatttttcctgtacggagaccatgaaggagatgtgtttgccaccggcggagaagtggaa
atcacacgtgtgccagaggcgctttatgactattacaccaggactatacccatctccaag
attgaccggtctgctacaattgaaagcattaagagatgcatcgagaccgacattgacaag
ttgccagaaaagctgtgcgtcaagtggcctgaagggaatcctttgccaaaaaatgctgtt
attcccgctgggactcctttagggcccttagctgtggaaattgttaacagaaatgagaaa
tcgatctcatccaggattcaaacaggggttcaaggtggagggataaaactgaatgttgga
ctcaaaatattctttcatggtcccaaagaagtcaaacaacccaaaaacgtttgtgattta
agtgccaaatatgtacctggtcatggacactggttcaaaaaaaatggatccctgaccaat
ctggggaagtacactctgactctacaagctgagttaagtgaaaactccaaaacgtcctat
ggcggcagacagcttcccagctacaagcacaagttcacagtcaaagagggaaatgcagag
atctttactattggtccattgaacccatctctgcgcatcggaatgccgttcaatattccc
acgcagatgaccgacatttatggccaccccacaaaacctcctccaaatatccagcctgtt
cttgaatgcagtgatttggaagtaagttttgagacaacagccaccagtgggaacagcttt
accatcgaaggtgtcaaagtcataggggaagtccagaattaccaacagaccaggagcttt
gacctgaaactgacactgccagggttgaaaaaacaaacacagactatcaagatcagtccc
tttcctggcaatccacattcccttcttgtgaaaccggaagtaaaaccagtgaaagtggag
aatggaaacccagttagttttaatgttgaagttcgtgatgaggctggaaacatcactgcc
aacgccaaacagatagttcgctgccaggttcccgggcttaagttggcggtgacagactgc
agcagcacaggaaccggccagattgtgacggagcctataaacctgaaaatcatcaacgga
gagccacaaatgctgcaagctaaatttgacatgcctagtcagaagcatgttgtagccatc
acaacagagctgaaggtcatgccaagctgtcgagtctcatggatggagcttttctgtgag
ggggaggaaaggctggagctgaagaatgaggaaaagatacagtggcaagctggaggggtg
ctggaaaacctggtttttaagctctatgatgagtctggaaaggaggtggaggtcacccct
gaaatagcctccaacatcaaggttaactggacaggagtcattgatcagagagctttgata
atggggagactgccagatgttcaggttcccacaaaagtccaggaagagcgattccaccag
gtctcctaccgggaccacagcgtgtctttcagctttaccattgtgccttgtccagatgaa
ccagcgcgactgaaggcaactgtttctgagaacacggtgaaactcggggaaactgtcacc
gcacccataaagttgaagcttgtggaccactacgacaatgtcaccaatagcctgacctct
gattgtgtgacttcaatggctgtggaagctgagggtctcgataaatccaacattgcattc
atatgggaggagagcagcggctctgttaaagtctctggagttcgtttcacctcggggccc
ctggggaccagagaagtttgcttcagctacggcgactacacagaacaaattaactttaaa
gtgatggccgggatccccaccaagcttaaactcctcagtgggcctgagatgcctttgcag
atcttgaatggtacaggtatttccacgccgttcgtcgtgcagttgtgtgacgagtgggaa
aacccttccccagaccagagagtggtggtggagacgagagcttcaccctcaacagcgaag
gtgacgacatctgtcacttcacaacctgtggacgcagaaggaaaagcagcctttacagtt
actaatgtgaaagggttaaaggggtactatcaactcgaatttttcgggtgctttaacagg
aaacccatccctggtccacatgtgaacttcaatatcatccctgatcccaacaaacccgac
aaactttcagtaaactacgacaccagtgcaaggtttctcgctggaggcacattccctgtt
ttctctgtggccgtgctgtctgatgcagggagtgcaatgacggcttttaagtctgctgat
ttgttcatgtggtattggagtggagagtcattgacacgtccaaaaacagctactgtgctg
atgtgcagcaaaccgatggagaatgacagcaaatcctgttattactttagagataaaaaa
atcccacagagtgttgggacatacaccgtacaattctccctgcggattgaaaaaactgaa
gttgtgttcagtaatcagatcattgtaaatgtagtggccaatcaacccgtcaagttagga
cctgaatgtcagccacaaatcccagttgtgtcctacagcagagacatcgccaaccgaact
ttagttgagaacatgactctgaagattatggatcagtatggtaatccaaccgggcagaac
ctgaatggcaaggtgttggtctccataaagtgtcctgatggggagcaaagcacaaacctc
cctctgcttgaagaggtcagcactgttgaaataaacctaaaagacggaagcacccacatc
gaaaggctggcgatcagggagagcagccctggggagaacggaagaagatacattctcatt
ttcaaaccagaagtggtgatgccgccttcatctttgagtccttttgaacttcccttccat
ttttacaacgactctgaaaaccaacgaaaagtttctgaactgacgaagaaaaaggacgag
ctgagcgataattatgagaaactcaacaaaaaatgttccttgcttgccagacttcgtgaa
ttgcttactaaaaacgttctggatgccaacaaaaaagaggaagccctcaaaaaagtgctg
gaagaaagcagaatacaagttttgcaaccttcatctatccaaaatattgacagcttactc
caacaaaacgcagatgaaaagaaaacaatagaggatattcccaggagagtgtttcctatg
gctaaccgcagtggaccagatattctggggaaggtgggccaccttgctcatattagcgat
gagaaagctgccttggtcatctcttggcacctgtcttcagaaatggactgcgtcatcacc
aagacgacggcagaagctcagaggatcttccgtagcgaatatggcaggcagcaggtcatg
gccctcgacagcatttatgtgaatccaagaagtcaaggtcctctacctcacataaaaaac
ggccgagaactgttcagtccagttgggaatccactctatgcaaggaacttgctgatttat
accgccgaagaggagagctgtgagcacgtgtttaaaaacatccttggtaacactattctg
atggacgacatagagtctgccaccaattacaggaaggcggttattcagaaagggatctac
tgtcccaccatattgacccgggatgggaacaggctcagtgccagcggcaagtttgggggc
gcacagaacaaagcaccacatgaggacatggtgaagaagtttggaacccctctacctcaa
cgctactacgaactgcagaaggagagagagttgctcattcaatttcgttcagctttggag
aagaaaaaagatgaggacgataagcgtaataatacgatactgaagctttctgaaactcga
caagaaatggaggaaactaagacggagcttcaggagattgaaaggcagcttgcatcagtc
agatcagggaaacgaggacctgaagacatttcagatccttccggcctcatgataaaacgc
ccaagacggagatccaaggatacgccagagaggttttag
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