Poecilia reticulata (guppy): 103456942
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Entry
103456942 CDS
T05149
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pret03036
]
103456942
03400 DNA repair and recombination proteins [BR:
pret03400
]
103456942
Chromosome and associated proteins [BR:
pret03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103456942
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103456942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_1st
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
EPO_TPO
rve
Motif
Other DBs
NCBI-GeneID:
103456942
NCBI-ProteinID:
XP_008395049
LinkDB
All DBs
Position
LG20:complement(22582277..22602672)
Genome browser
AA seq
1768 aa
AA seq
DB search
MIQVNDCRFEKIVKKNLETRGLDFNGFVQVVQKEFSVPSNETFVLTTTDRIIVDGEKLDQ
LKDGTTLYLLRKIDQVLLSSVEEEINFVPHYNTLIESGANEYFIEGQKSLPCALAELVDN
ALSATAKNSGVRSIEIRLFFNKRFGKPAIIVLDNGSGMTSKQLNNWAIYRLSKFTRENST
FESEVEGSDPPAHVPRSLNSDISFFGVGGKRAVFHMGDAVRMISRPLGSPDVHELVLSKD
EFQEKAQKKQDVYRSKILNRMPGDVSHITDDERFLRTIIAEETQKESFTVVVITGIFQEH
INYLKLPVCFKEWTRELAHIYHYYIHGHNGNCKADVSPTSDDLRRIDIVVTLWASKRTEK
MNLREVEDDMQTLFINAAKDTFEFRAESPDGGIVEGVLRYHPFLYDRETYPKDSCVNQAP
GENDDNNEMESEATGQARGRRDIFECFWNGRLIPYTTIPGFHWCQKKGSRLPEECYSRFS
GVLFTDGKFRVSATKLKFMELEKELEQRGTHFTRVCPIQKSSKRGDIQKEFTNWLQNCHE
TLDKQVKFIDYKETVTRSEVQAKKKQHPWAVFSSIEQHGRRYTAGDIVKSQKPAQIIHGT
VLKFFLHGAHKGDVFATGGEVEIKREPQGLYEEITKVIPIAKIDMTATDENIKNHIENER
KKLPDRLKVDWPEGNVLPENAVLPAGTPIGPIKVEILNGNGDSISSRIQTGTHGIQLNVS
LKVVFNGATEDKVLSLTASYISKKGHFFTEIGNLHRLGKYTLTLTTVLSDTSKGVQTVYG
GRELPEYKHEFRVKEGFAESFSVGELSSSFRVGEPFDIPLHMKDCYNHTTKPPPNIKPAL
QSSGLELSYETTTCSGVLLTIQGVKAKGKLPNYASVKNYDIKVTLPRLKNDTQTVKISLH
PGNPHSLLVKSKTNPVEVENGNPVSFEIEVHDEVGNITRFPGLKVYCQIPGLDLMEKDCS
AGKADLETKPVNHKIVNGEPQILEARFEIPSQKQVAPVTRQLMVMPSKRISRMELFSQRE
EELVLKNNENIKWKAGGVLEKLFYKLYDEAGREVPITAEIASNIKVTWGTDVDQRNLVNG
WLPDLQVSKHVDGEHLYQVSYQEKKVSFCFRIVPCPDEPAGLKATQPQSIVKLGETLSGD
IKLELVDQYNNVTKKLTSTCGKSFSAEAEGLDKTSIDFKWNESCSCVVAIGVRFHSGSPG
PRVIYFHYKEFTKSVVLEVTAGVPSQIKLVSGPEQPLQVLNGHDIPTPFLLQLCDEWGNP
SPDENMNVEIKPSPVTLTLTTEVLNPMDTEGKTCIKVNQIEGSKRYYALEFKGSLNGKSI
PGPSVNLTLLPDPNKPVRLSVDFDRNVKFSAGGKFPVFSVTVFSEDGSPMTAFKPADLSM
LLWEGPPSMRPATITELKYRKPVEDERKDCYEFREEEIPTRVGEYTVEFSLQTNKKEDHL
RSQICVNVVANEPITLEPDCQQQTPVVFYCTEMANRILVENMTLKITDQFGNSAGQNLNG
TVSISIKCPEEERSRILPLFDGRTNIISVKLIEGSVLINSLAIMEDSPGENGSRYVLHFK
PEVTNPPTSLSPFELPFHFYNDFENQQKKVELMKKKDELTEAVKECNKFFHKICDQKDLL
KNNVDVSTRKEVSLRNELNERGIKTEHQLSITDIKRCLKQKTSELETIEKTPRRIFSIHG
KFNGPDILGMVGQLAFVADDDVARVISWILQGDMDCVITTTTTAAQKLYEDTRGNQQVMA
LDNILVQQEDRPLPHVAILDGNSDLVNF
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgattcaagtgaacgactgccgctttgaaaagattgtcaagaaaaatttggaaaccaga
ggtttggacttcaatggctttgtgcaagttgttcaaaaggaattttctgtcccttcaaat
gagacatttgtgttgaccacaactgacagaataatagtggatggtgaaaaattagatcaa
ctaaaagatggcacaaccctctatcttctacgaaaaatagaccaagtcctgttgtcttca
gttgaggaggagattaactttgtccctcactacaacacactgattgaaagtggggcaaat
gagtactttattgagggccagaaatcactgccctgcgctcttgctgagctggtggacaat
gctctttcagcaactgcaaaaaactctggagtcaggagtatagagataaggctgtttttt
aacaaaagatttgggaagcctgctatcattgtgttggataatgggtctggtatgacctcc
aagcagctcaataactgggccatttacagactctctaagttcacaagggaaaacagcaca
tttgaaagtgaagtagagggaagtgatccacctgctcatgtacctcgcagtctcaacagt
gacatttcctttttcggagttggaggaaaacgagctgttttccacatgggggatgctgtc
agaatgatcagcagacctctgggctctccagatgttcatgagttggttctatcaaaggac
gaattccaggaaaaggcgcagaagaaacaggatgtttacagaagcaaaattctcaacagg
atgcctggagacgtctcacacataacagatgatgaacgatttcttcgtaccatcatcgct
gaagaaactcagaaagagagcttcactgtggttgtcatcacaggaatctttcaggagcac
atcaattacctgaaattacctgtttgctttaaggagtggaccagagagctcgctcacatt
tatcattactacattcatgggcacaatggaaactgcaaagcagacgtctctccaacatca
gatgacctccgaagaattgacattgttgtgactttgtgggcttccaaaagaacagaaaag
atgaatctcagagaagtggaagacgacatgcaaactctattcataaatgcagccaaagac
acatttgagttcagggccgaatctccagatggcggcattgtggagggtgtccttcgatat
cacccgttcctctatgacagagagacctaccctaaagattcatgtgttaatcaagctcct
ggtgagaatgatgataataatgaaatggagtctgaagccacaggtcaggcaagaggaagg
agggacatctttgagtgtttctggaatggacggctcatcccttataccaccattcctgga
tttcactggtgccagaagaaaggatcaagattaccggaagagtgctatagccgcttttct
ggggtgcttttcactgatggcaaatttcgtgtcagtgcaaccaagctgaaattcatggaa
ctggaaaaggagttggagcaacggggcacacatttcacccgtgtttgtcctattcagaaa
tcctcaaaaagaggggacattcagaaagagtttacaaattggctacaaaactgtcacgag
acgctcgacaaacaggtgaaatttattgactacaaagaaactgtgacacgatcagaagtg
caggctaagaaaaagcaacatccctgggcagttttctcctctattgagcaacacggcaga
cgatacactgcaggggacattgtaaagtcccagaagccagcacaaattattcatggtacc
gtgttaaaattctttctgcatggagctcataaaggagacgtgtttgccacaggcggagaa
gtggaaatcaagcgtgagcctcaaggactttatgaagagatcaccaaggtcatacccatt
gctaagattgacatgactgccacagatgaaaacatcaaaaaccacattgagaatgaaaga
aagaagctgccagatcgcctaaaagttgactggccagaaggcaatgtcttgcctgaaaat
gctgtgttgcctgctgggactccaataggacctattaaagttgaaattctaaacggcaat
ggagactccatctcctcgaggattcagacagggacccacgggatacagctgaatgtttca
ctcaaggtggtgtttaatggtgctacagaagacaaggttctttctctcactgcctcctat
atatctaagaaaggacattttttcacagaaattggaaacttgcacaggttggggaagtac
acactgactctaactactgtgctaagtgacaccagtaagggagtgcaaacagtctacggt
ggcagagagcttccagaatacaagcatgagtttagagtcaaagagggatttgcagagagc
ttttctgttggggagctgagttcttcttttcgtgtgggagagccgtttgacattcctctg
cacatgaaagactgttataaccacacaacaaaacctcctcccaatatcaaacctgctctt
caaagcagtggtctggaactgagttatgagacaacaacttgcagtggggtcttgttaacc
atccaaggtgtcaaagccaagggaaaactcccaaactacgcctcagtcaagaattatgac
atcaaagtgacactgcctcggcttaaaaatgacacacagactgtgaaaatctctcttcat
cctggaaatcctcattcacttcttgtgaagtctaaaacaaacccagtggaagtggagaat
ggaaacccggtgagttttgagattgaagtccatgatgaggttggtaacatcactcgcttc
cccggactgaaagtttactgccagattcctgggttggatttgatggaaaaagactgcagc
gcaggaaaagctgaccttgagacaaaacctgtaaaccacaaaattgtcaatggagagccg
caaatacttgaagctagatttgaaatacctagtcagaaacaggttgcaccagtgactaga
cagctgatggtcatgcccagtaaacggatctcgcggatggagcttttctctcagcgcgag
gaagagctggtgttgaagaacaatgaaaacataaagtggaaagccggaggagtgctggag
aagctgttttataagctgtatgatgaagctggaagagaggtcccaattactgctgaaatt
gcctccaatattaaggttacatggggaacagatgttgatcagagaaatctagtaaacggc
tggctaccagatctacaggtttccaaacatgtggatggagaacacctgtaccaggtctcc
taccaggaaaagaaagtttctttctgcttcagaattgtgccttgtcctgatgaaccagca
gggctaaaagcaactcagcctcaaagcattgtgaaacttggtgaaaccttatccggagac
atcaagttggaacttgtggaccagtataataatgtaaccaagaagctgacctccacttgt
gggaaatccttttctgcagaagccgaaggtcttgacaaaacgagtatcgacttcaaatgg
aacgagagttgcagttgtgttgtggcaataggagtccgtttccactcagggtctcctgga
cccagagtgatttacttccactacaaagagtttaccaaaagtgtcgttcttgaagtgaca
gcaggagttccttcccaaattaaactggtcagcggaccggagcagcccttgcaggttttg
aatggtcatgatattcccacaccattccttctccagctgtgtgatgagtggggaaatccg
tctccagacgagaacatgaatgttgagataaaaccttctcctgtgactctaacgttgaca
acagaggttttaaatcccatggacacagaagggaagacctgcatcaaagttaatcaaata
gaaggatcaaaaaggtactatgcgctggagtttaaaggttccctaaatggtaaatccatc
cctggtccatcagtgaacctcactctcctccctgatcccaacaaacctgttagactctca
gtggactttgacagaaatgtcaagttttctgctggaggcaaatttccagttttctcagtg
acggtgttttctgaagacgggagtccgatgacagcttttaaacctgcagatctgtccatg
ttgctgtgggagggaccgccatcaatgcgtcctgcaacgatcactgagctaaaatacaga
aaacctgttgaagatgagaggaaggactgttatgaatttagagaagaagaaatcccaaca
cgtgttggggaatacactgtagagttttctctacaaaccaacaaaaaagaagaccatctt
aggagtcagatctgtgtaaatgttgtggccaatgaacccatcacactagaacctgactgt
caacaacaaactccagttgttttctactgtacagagatggccaatcgaatcttggttgaa
aacatgactttgaagataacggatcagtttggaaattcagccgggcagaacctgaatggt
actgtgtccatctcaataaagtgtcctgaagaagaaagaagcagaatcctccctctgttt
gatggaagaactaacatcatttcagttaagttgatagaaggaagtgtcctcatcaatagt
ttagcgatcatggaggacagtcctggtgagaatggaagcagatatgttctccacttcaaa
ccagaagtgacaaatcctcccacatctctgagtccctttgaactgcccttccatttttat
aacgattttgagaaccaacaaaaaaaagttgaactgatgaagaagaaggatgaactgact
gaggctgtaaaagaatgcaataaattctttcataaaatttgcgatcagaaggatttgctg
aaaaataatgtcgacgtctcaactaggaaagaagtttctctcagaaatgagctgaatgaa
agaggcataaaaacagaacaccagttatcaatcacagatattaaaagatgcctaaagcag
aagacctctgaattggaaacaatagagaaaactccaagaagaatcttttccattcatgga
aaattcaacgggcctgacattcttggaatggttggccaactggcctttgttgccgatgat
gatgttgcaagggtcatctcgtggatcttgcaaggagacatggactgtgtcatcaccaca
acgacaacagcagctcagaaactttatgaagacacacgaggcaatcagcaggttatggcc
ctcgacaatattcttgtgcaacaggaagacagacccctgccacatgtggcgatactagac
ggaaactcagatttggtgaacttttag
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