KEGG   Poecilia reticulata (guppy): 103476777
Entry
103476777         CDS       T05149                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103476777 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pret03041]
    103476777 (smndc1)
Spliceosome [BR:pret03041]
 Complex A
  U2 snRNP components
   U2 related factors
    103476777 (smndc1)
 Complex B
    103476777 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    103476777 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2730 PUA_4 Atrophin-1
Other DBs
NCBI-GeneID: 103476777
NCBI-ProteinID: XP_008427571
UniProt: A0A3P9P8J5
LinkDB
Position
LG15:13267042..13285026
AA seq 238 aa
MSEDLVKQLSSYKAQLQQVEVALSTDPDNEDLLKLQKDLQEVIDLTKDLLSSQPVDGSSS
TSGSESVPVKRSWKVGERCLATWSNDGQAYEAEIEEIDRENGTAAVTFTEYGNADVIPLQ
NLKVVEEGKQSEDDGGLKSKSRKEQIAEQREYKKKKAQKKVQRMKELEQEREEQKSKWQQ
FNNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcggaagatctggtgaaacagttgagcagctacaaagctcagttacagcaagtagaa
gttgccttatcaaccgatccagataatgaagacctcctaaaacttcagaaggacttgcag
gaagtcatcgatctgactaaagatctcctgagttcgcagcccgttgatgggtcttccagc
accagcggctcagagtcagtgccagtgaagagaagctggaaagtgggtgaacgatgtttg
gcaacgtggagcaacgatggccaggcgtatgaagctgaaattgaggagatagacagagag
aacggcactgcggccgttacgttcacagagtatgggaatgctgacgtgattcctctgcag
aacctcaaagtcgtggaggaagggaaacaatctgaggatgacggaggtttaaagtcaaag
tcaagaaaagagcaaatagcggagcagcgagagtataagaagaagaaagctcagaaaaag
gtacagaggatgaaggagctggagcaagagagggaggagcagaagtctaagtggcaacag
ttcaacaacaaggcttactcaaagaacaagaaaggacaggtaaagagaagcatatttgca
tcaccagagagtgtaaatggaaaggtgggagtgggaacatgtggcattgcagacaaacct
atgacccagtataatgacacatccaaatacaacgtcagacatctgatgccacaatga

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