Candidatus Peribacter riflensis: PeribacterA2_0075
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Entry
PeribacterA2_0075 CDS
T04147
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03030
DNA replication
prf03410
Base excision repair
prf03420
Nucleotide excision repair
prf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PeribacterA2_0075
03410 Base excision repair
PeribacterA2_0075
03420 Nucleotide excision repair
PeribacterA2_0075
03430 Mismatch repair
PeribacterA2_0075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prf03032
]
PeribacterA2_0075
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_0075
Enzymes [BR:
prf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PeribacterA2_0075
DNA replication proteins [BR:
prf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PeribacterA2_0075
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PeribacterA2_0075
NER (nucleotide excision repair)
GGR (global genome repair) factors
PeribacterA2_0075
MMR (mismatch excision repair)
DNA ligase
PeribacterA2_0075
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PeribacterA2_0075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
RNA_ligase
BLACT_WH
Motif
Other DBs
NCBI-ProteinID:
ALM09471
UniProt:
A0A0S1SU78
LinkDB
All DBs
Position
complement(68987..71134)
Genome browser
AA seq
715 aa
AA seq
DB search
MEKRAAAARIEKLRKEIWRLNRAYFIENKPAASEDVRDALKQELIALEKEHPDLVTPDSP
TQRVGAPLDGRLPKVKHLSPKESLSDMFSREEIEEWMDQMRRALGKEDMHFHCIVELKID
GLNISLVYEKVQGEPRYRFLRALTRGNGIEGEDVTHTVRTIEALPLGFPAKESEKLPKYL
EISGEVYMTKAALKHLNKDLPDAEKFANPRNAAAGSVRQLDPKVTASRDLRILCYALDPH
GADALGIETQKELMEFLMEAGFPVHRGFEMCSTVEAIQKVFDGWKKERESLPFDIDGIVI
KVTERRLQRDLGSTAKAPRWARAYKFPAEQKTARILDIQLQVGRTGAITPVAHLTPTLVA
GTTVARATLHNADEIARLDVRIGDTVVIQKAGDIIPEVVEVLTKLRPHGTKPFHYPKHCP
SCGSALERPEGEAVHRCPNPQCAAMRQERIEHFASRHALDIEGLGKETVEVLLAEGLITD
PADIFSLTMEDLMGLPLFKEKKATNLLTAIEQARRAPLDRFLFALGIRHIGRETAEILAR
RLAWPVQETYLEVAEEIGPQVSLFAGGKKNVRVHGIAMAGILATLKKLTAEELAAIDQIG
PVVADSLVEWMHDEDNEELLKKFAHAGVIAVQPEGSHAPQIFAGKTFVLTGTLPSLSREQ
AKTLIKERGGKVSSSVSAKTDYLLAGAEPGSKWDDARKMDVKTIDEKEFLSLLKR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcgcgctgccgctgcacgcatcgagaaactgaggaaggaaatctggcgtctc
aatcgcgcctacttcatcgaaaacaagcctgcagccagcgaggatgtgcgcgacgccctc
aagcaggagctcatcgctctcgagaaggagcaccccgatctcgtcacccccgattcgccc
acccagcgcgtgggcgcccccctggacggtcggttgcccaaagtgaagcacctctcgccc
aaagaatcgctctcagacatgttctcacgcgaagagattgaagagtggatggaccagatg
cggcgcgcactgggaaaagaggacatgcactttcactgcatcgtggagctcaaaatcgac
gggctgaatatctcgctcgtctatgagaaggtgcaaggcgaaccccgctaccggttcctc
cgcgccctcacgcgcggcaacggaatcgagggggaggatgtgacgcacacggtgcgcacc
atcgaggctctgcccctcggtttcccggcaaaggaatcggagaagctgccgaagtacctg
gagatttccggcgaggtgtacatgacgaaagcggcgctgaaacacctgaacaaggatctg
cccgatgcagagaaattcgccaacccccgcaatgccgcggcgggcagcgtgcggcagctg
gatcccaaagtgacggcaagccgcgacctgaggattctctgctatgccctggatccgcac
ggcgcggacgcactcggcatcgagacgcagaaggagctcatggaatttctgatggaggcg
gggtttcccgtgcaccgcggatttgagatgtgctcgacggtcgaggcgattcagaaggtc
ttcgacggatggaagaaggagcgcgagagcctccccttcgatatcgatggcatcgtcatc
aaagtgactgagcggcgcctgcagcgcgatctgggctccaccgccaaggcgccccgctgg
gcccgggcctacaagttccccgccgagcagaagacggcgcgcattctggatattcagctg
caggtgggccgcaccggcgccattacgcccgtggcgcacctgacgccgactctggtggcg
ggcaccacggtcgcgcgcgccacgctgcacaacgccgatgagatcgcgcggctggatgtg
cgcatcggcgacaccgtcgtgattcagaaggcgggcgacatcatccccgaagttgtcgaa
gtcctgaccaaactgcgcccgcacggcacgaaaccttttcactacccgaagcactgtccc
agctgcggctctgctctggagcggccggagggcgaagcggtgcaccgctgtccgaacccg
cagtgcgcggccatgcgccaggagcgcatcgaacacttcgcctcgcgccacgcgctcgac
atcgaggggctgggcaaagaaaccgtcgaggtcctgctggcggaggggctcatcaccgat
ccggcggatatcttttcgctgacgatggaggacctcatgggcctgccgctcttcaaggaa
aagaaggccacgaatctgctcacggcaatcgagcaggccaggcgcgcgcctctggaccgt
tttctgttcgcgctgggcatccgccacatcgggcgtgagacggcggagattctggccagg
cgcctcgcctggccggtgcaggagacatatctcgaagtcgccgaagagatcgggccgcaa
gtatcgctcttcgccgggggcaagaagaacgtgcgcgtgcacggcatcgcgatggcgggc
atcctcgccacgctcaagaaactcaccgccgaagaactggccgccatcgatcagatcgga
cccgtggtggcagattccctcgtggagtggatgcacgatgaagacaatgaggagcttctc
aaaaaattcgcgcacgcgggcgtgatcgctgtccagccggagggcagtcacgcccctcag
atctttgccggcaagacgtttgtgctcaccggaacgctgccttccttaagtcgtgagcag
gcgaaaactcttataaaggagcgtggcggaaaagtgagttcctcagtgagcgccaaaacc
gactacctgctcgcgggggcggaaccgggcagcaaatgggatgatgcacggaagatggat
gtgaagacgatcgatgaaaaggagtttctctcactcttgaagcgctaa
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