Providencia rettgeri: RB151_003190
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Entry
RB151_003190 CDS
T04571
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prg
Providencia rettgeri
Pathway
prg03030
DNA replication
prg03410
Base excision repair
prg03420
Nucleotide excision repair
prg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RB151_003190 (ligB)
03410 Base excision repair
RB151_003190 (ligB)
03420 Nucleotide excision repair
RB151_003190 (ligB)
03430 Mismatch repair
RB151_003190 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prg03032
]
RB151_003190 (ligB)
03400 DNA repair and recombination proteins [BR:
prg03400
]
RB151_003190 (ligB)
Enzymes [BR:
prg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RB151_003190 (ligB)
DNA replication proteins [BR:
prg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RB151_003190 (ligB)
DNA repair and recombination proteins [BR:
prg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RB151_003190 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RB151_003190 (ligB)
MMR (mismatch excision repair)
DNA ligase
RB151_003190 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RB151_003190 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APC10034
LinkDB
All DBs
Position
338193..339641
Genome browser
AA seq
482 aa
AA seq
DB search
MALYAAVSPAFRKLPPVPLPEKVLLAKHPIPHTGLKKLNEREVYNWINTRKDIWLQPKID
GVAVSLVYENGQLISMISRGNNLEGIEWRAKADFIPTVPKKIKHQGTLILQGELFWQMHE
HIQAEYGGVNARNKVAGWLMRKNLPTSNENNIGIFIWAWPSGNTDPKTQLSLLSKIGFPL
AEQYSHKIESKADVKQLREYYYQSKLPFVTDGIVLKSFPAPSAQAWQAKQNSWAIAWKYP
FRSTLSGIVELQFKVGRTGRVSVVAVISPVTIDSKKISRVSLGSLSSWKKRDLLVGDKVL
VSLSGLGTPKIEEVVWRREERLYPDTTNFIQFHSLTCFTYTRSCLQQFVARLVWLGKQLN
MKGISEATWQQWVTHNNLTQLTTWLSESWQNSLPKNKRNQLLIEQLRLASVQPLSAWLRG
LAIPLSKEYIGRITDLKMLDNQSVINKMKLTANQKKKLSKWLAEPEVKLILQVLAGRQVN
SP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctatgcagcggtgtcgccagctttcagaaaacttccccctgtccctcttcct
gaaaaagtgttattggctaaacacccaatcccccatacagggttaaaaaaacttaatgaa
cgagaagtctataactggataaatacacgcaaggatatttggcttcaaccaaaaatcgat
ggtgtagcagtcagcttggtttatgaaaatgggcaacttatttcaatgataagtagaggt
aataaccttgaaggcatagagtggcgagcaaaagcggattttatccctacagtacctaaa
aaaattaaacatcaggggacattaatcctccagggtgagcttttttggcaaatgcatgaa
catattcaagcagaatatgggggagtgaatgcgagaaataaagtcgctgggtggttaatg
cgaaaaaatttaccaacatccaatgaaaataatattggcattttcatttgggcgtggcca
tcgggaaatactgaccccaaaacacagctgtcattactttctaaaatcggcttcccactt
gcagagcaatatagccataagattgaaagtaaagctgacgttaagcaattacgtgaatat
tactatcaaagtaaattacctttcgtaaccgacggcatagtattaaaaagtttccctgcc
ccaagcgcacaagcttggcaggctaagcaaaatagttgggcgatagcgtggaaatacccg
tttcgtagcacgttgtcaggtatcgtcgaattacagttcaaagtaggtcgaacagggcgg
gtcagtgttgtcgcagtcattagcccagtgacgattgattcaaaaaaaatttctagggta
agtctagggtcgctgtcttcatggaaaaaacgtgatttgttagtcggagataaagtcctt
gtctccctttcagggttggggacaccgaaaattgaagaagttgtttggcggcgagaagaa
cgactttatcctgataccaccaattttatacaattccactcattaacttgttttacttat
acgaggtcttgcctgcaacagtttgttgcgaggctcgtttggttaggtaagcaattaaat
atgaaagggatcagtgaagccacatggcagcagtgggtaactcataataacctcactcag
ctaacaacatggctatcagagtcatggcaaaatagtttacctaaaaataaaagaaatcag
ttattaattgagcaattaagattggccagtgtccaaccactttctgcatggttaaggggg
ctagcgatccctttatcaaaagaatatatagggcgaattactgatttgaaaatgttggat
aaccaatctgtgattaacaaaatgaaattaaccgccaatcaaaagaaaaaacttagcaaa
tggttagcagagcctgaagtcaaattgattctacaagtgttggcgggtagacaagtaaac
tccccttaa
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