Paenibacillus riograndensis: PRIO_6182
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Entry
PRIO_6182 CDS
T03849
Symbol
ligA2
Name
(GenBank) DNA ligase 2
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pri
Paenibacillus riograndensis
Pathway
pri03030
DNA replication
pri03410
Base excision repair
pri03420
Nucleotide excision repair
pri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PRIO_6182 (ligA2)
03410 Base excision repair
PRIO_6182 (ligA2)
03420 Nucleotide excision repair
PRIO_6182 (ligA2)
03430 Mismatch repair
PRIO_6182 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pri03032
]
PRIO_6182 (ligA2)
03400 DNA repair and recombination proteins [BR:
pri03400
]
PRIO_6182 (ligA2)
Enzymes [BR:
pri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PRIO_6182 (ligA2)
DNA replication proteins [BR:
pri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PRIO_6182 (ligA2)
DNA repair and recombination proteins [BR:
pri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PRIO_6182 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PRIO_6182 (ligA2)
MMR (mismatch excision repair)
DNA ligase
PRIO_6182 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PRIO_6182 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
DUF669
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CQR58529
UniProt:
A0A0E4HF97
LinkDB
All DBs
Position
I:complement(7192751..7194763)
Genome browser
AA seq
670 aa
AA seq
DB search
MDVMHTIEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIILPHSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWHTRVLKLVNDYNSKNPENPLPEPCYAVE
LKFDGLTLNLTYRDGTLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGI
MNLSVLADYNTRAAEPLKNARNGAAGALRNLNPKTTAERRLNAFFYNIGYAEGVQFSDHQ
EMMDFLRTNRFKVNPYLTYFDKFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREVL
GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPVDCPACGFPLEMRGA
HLFCNNKLNCKPQIIGRITHFASRDAMDIETFSDKTAGQLYEELAVREPADLYELTFEQL
VKLERFGEKKAANLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEGVMKAT
AEELSGLPDIGGIVAESIVSFFADPFVVTSINRMLELGVEAKAPEAPRQVSTDSFFSGKT
VVLTGSLQKLTREEAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQVIED
EEELIRLLES
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatgttatgcacaccatagaagagctcgtagccgagctgaatcaatataattatcac
tactatacgctggatgcgcctcaggtcagcgacaaagagtacgatgtcctttatgataag
ctggtggcccttgaagcggagagcggcatcattctgcctcattctcctacacagcgtgta
gggggagagctgctgaaaggcttcaccccgcaccggcatctggccccgctgtggagcctg
gataaggcgcagaatattgaacagctccgcagctggcacacgcgggtgctgaagcttgtg
aatgattacaacagcaaaaatccggaaaaccctcttccagagccctgctacgcggtggaa
ctgaaatttgacggcttgaccctgaacctgacctatcgtgacggaacgctggtacaggca
gcgacacgcggcaatggcgtgaccggggaaggcattcttgcccaggtgaagacgatcaaa
tcggttcctctgacgattccttttaaggaaggcgttattgaggtgcagggtgaagggatt
atgaatctgtctgtgctggccgactataacacaagggctgcggaaccgctcaagaatgcc
cgcaacggggcggcaggggcgctgcgcaacctgaatcccaagactacggcggaacgaaga
ctcaacgcttttttctataatataggttatgcagaaggtgtgcagttctccgaccatcag
gaaatgatggattttctgcggaccaaccggtttaaggtcaatccgtatcttacttatttc
gataagtttgatgatgtcaccgagcagctggcggagatcgaagagagccgttccggtctt
gactatctgatcgatggggcggttattaaggtaacggacttccgcatccgcgaggtgctg
gggtatacggacaagttcccgcgctgggcggtggcttataaattcgaggcagaagaaacc
acaaccgttctggagtcggtaagctggaacgtgggccgcaccggcaaggtcactcctttg
gcccgggttgaggcggttgagctggctggcgtgactgtccagaactgtacactgaacaac
gttggagatattgaacggaagaatctcaagcatgccctcggtacgcgtgtgttcatccgc
cgctccaatgatgtcattccggaaattctcggcaaagtcacagaagagagtgacgggggg
gagattattttccctgtagactgcccggcctgcggcttcccgctggaaatgcgcggtgca
cacctcttctgtaacaataagctgaactgcaagccgcagatcatcggacggattactcac
tttgcctccagggatgcgatggatatcgaaaccttcagtgacaagacggctggtcagcta
tatgaagaattggctgtgcgcgagcctgctgatttgtacgaactcacctttgagcagctt
gtcaagctggaacgttttggagagaagaaggcggcgaatctgctgaaagcgctggaggag
agcaaaggacgggatcttgcgtctttcctgtatgcgctggggatcccgaacaccggcaag
gcgaccaccagaatgctcgcggatcattaccgcagcctggaaggggtcatgaaggcaact
gccgaggaactgtccggacttccggacatcgggggcattgttgctgagagcattgtcagc
ttttttgccgatccctttgtggtaaccagtatcaaccgtatgcttgagctaggggtggaa
gcgaaggcacctgaggctccgcgccaagtgagtaccgattctttcttcagcggcaaaacg
gtcgtgctgaccggttcgctgcagaagcttacccgcgaggaagcggcagaacgtctggaa
gcgctgggtgccaaagtttccggcagtgtctccaaaaaaaccgatctcgtcatcgccggc
gagaaagcaggcagcaagctggccaaggcgcagcagctgggcattcaggtgattgaggat
gaagaagaactgatccggctgttggagagttag
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integrated database retrieval system
