Providencia rustigianii: NCTC6933_00358
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Entry
NCTC6933_00358 CDS
T06047
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prj
Providencia rustigianii
Pathway
prj03030
DNA replication
prj03410
Base excision repair
prj03420
Nucleotide excision repair
prj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC6933_00358 (ligB)
03410 Base excision repair
NCTC6933_00358 (ligB)
03420 Nucleotide excision repair
NCTC6933_00358 (ligB)
03430 Mismatch repair
NCTC6933_00358 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prj03032
]
NCTC6933_00358 (ligB)
03400 DNA repair and recombination proteins [BR:
prj03400
]
NCTC6933_00358 (ligB)
Enzymes [BR:
prj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC6933_00358 (ligB)
DNA replication proteins [BR:
prj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC6933_00358 (ligB)
DNA repair and recombination proteins [BR:
prj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC6933_00358 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC6933_00358 (ligB)
MMR (mismatch excision repair)
DNA ligase
NCTC6933_00358 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC6933_00358 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
VEB63237
LinkDB
All DBs
Position
1:364940..366649
Genome browser
AA seq
569 aa
AA seq
DB search
MHYILTRGSWIFMLLQVVTSLAYGMEYHQAKDNCDSPNQNILINEHQRLGNQLQEWNKNY
LVDGFSPINDEVYDQLLSKWQQRQRCLSLSDSLPQVPLPILTPLVKHPLPHTGLKKQNLN
EITTWIAKRKEIWLQPKVDGVAVSLVYDNGQLVSLISRGNGVEGLEWRKKADFILDLPKV
IPIKQRVILQGELFWKLNNHVQKQLGGLNARSKVAGWLMRKKLPEKIEDNIGIFIWAWPD
GDLQQEVQLSRLSEIGFDLSKRYSHQVTSIEQIIQRQEDYFSTPLPFATDGIVLKSFPTP
PSAAWQSNQNSWAIAWKYPLQNIISEITGLKFGVGRTGIVNVVASIKPVTLDAKQVSHVN
LGSLNSWKKKDLLVGDHIQLTLAGHGIPKVEQVIWRVAHRDYPETMLLEQFNRWSCFSYS
IECLPQFVARLTWLGKQLGIKGVGEKTWQQWAENYGLSQLLEWLSPSWQGQLPKTKTNLK
HLEQLQKVADQPLAVWLKGLDIPLSNTEIKKIDTISMLYEPTIIKYLKLSDKREQQFKHW
IEVTEIKLALQIIQEIKKPLAQANGLSRY
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcactatattttaacaagaggctcttggatattcatgttattacaagtggtgacatca
cttgcatacggcatggaataccatcaagcaaaagataactgcgattcaccaaatcaaaat
atcctaataaatgagcatcaaagattaggcaatcagctccaagagtggaataagaactat
ctagtagatggttttagtcccattaatgatgaagtctatgatcagctattgtctaagtgg
cagcagcggcaacgttgcttgtcactttctgatagcttaccgcaggtaccgctcccgata
ctaacgcctttagtaaagcatccgctgcctcatacggggctaaaaaaacaaaatttaaat
gaaataacgacttggatagcaaagcgaaaagagatttggttacaaccgaaggtggatggt
gtcgcggttagcttggtgtatgacaatggacaattagtttcattaatcagtcgaggcaat
ggagttgaagggctagagtggcgcaaaaaagcggattttatcttggacttgccgaaggta
attcccataaaacagcgcgtaattttgcaaggtgaacttttttggaaattgaataatcat
gtgcagaagcagctaggtggcttgaatgcccgaagtaaagtcgctggatggcttatgcgt
aagaaattaccagaaaaaatagaagataatattggtatttttatctgggcttggcccgat
ggcgacctgcaacaggaagttcaacttagtcgactatcagaaattgggtttgatttatct
aaaaggtacagtcatcaagtcaccagtattgagcaaattattcaaaggcaagaagattac
ttctcaacgcctctcccctttgcaaccgatggtattgtcttaaaaagttttcctacgcca
ccttcagctgcttggcagagtaatcaaaatagctgggcgattgcatggaaatacccacta
caaaatattattagtgaaattacaggcttaaagtttggtgttgggcgtactggtattgtt
aacgttgtggcatcaattaagcctgtgactcttgatgctaaacaggtgagtcatgtgaat
ttgggttctctaaactcatggaagaaaaaggatcttttagttggtgaccatattcagtta
acccttgcagggcatgggattccgaaggttgaacaggtaatttggcgagtagcccatcgg
gattatcctgaaactatgttattagaacaatttaatcgatggagttgtttctcttattct
attgagtgtttaccccagtttgttgcccgtttaacgtggttaggaaagcagttaggaata
aaaggggttggtgaaaaaacatggcaacaatgggctgaaaattatggactgtcccagcta
ttggaatggttatcaccaagttggcaagggcagctacccaaaactaaaactaacctgaaa
caccttgagcaattgcaaaaagttgcagaccaacctttagccgtatggctaaagggatta
gatattccattgagtaatactgagatcaaaaaaattgatacgatttcaatgctctatgag
ccaacaattatcaagtacttgaagctatcggataagcgtgaacagcagtttaagcactgg
attgaagtaacggaaattaagttagcattacagattatacaggaaataaaaaagccatta
gctcaggctaatggcttatcgagatactaa
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