Pedobacter riviphilus: H9N25_00860
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Entry
H9N25_00860 CDS
T08657
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H9N25_00860 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_00860 (nth)
Enzymes [BR:
prk01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
H9N25_00860 (nth)
DNA repair and recombination proteins [BR:
prk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
H9N25_00860 (nth)
Prokaryotic type
H9N25_00860 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
DUF2400
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
QNR85090
LinkDB
All DBs
Position
complement(194903..195568)
Genome browser
AA seq
221 aa
AA seq
DB search
MLKKERYKLFVEHFSAKQPDAETELHYNNPYQLLVAVILSAQCTDKRVNMVTPALFQRFP
NAKALAEATPDIVFDYIRSISYPNNKAKHLVGMANILLNEFNDVVPSGIDDLQKMPGVGR
KTANVIASVIYNAPAMAVDTHVFRVANRLGLTNGKTPLAVEKDLVKNLPEHDIHIAHHWL
ILHGRYVCVARSPKCDVCEITYMCRYFERLTAQNERDKLKA
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaaaagaacgctacaaactttttgtagaacatttttcggccaagcagcctgat
gcagaaaccgagttacattataataatccttatcagcttttagtggcggtaattctttct
gcacagtgcaccgataaaagggtaaatatggtaacccctgcactttttcagcgctttcct
aatgctaaagctttagccgaagctacacctgatattgttttcgactatatcagaagtatc
agttaccccaataataaggcaaaacacctggtgggcatggccaatattttgcttaacgaa
tttaacgatgtggtaccttcagggattgacgacttacagaaaatgccaggtgtgggccgt
aaaaccgctaatgtaattgcctcagtaatttacaatgcaccagcaatggcggttgatacc
catgttttccgtgtggccaaccgtttaggactaaccaatggcaaaaccccattggcggtt
gaaaaggatttagtgaaaaaccttcctgaacacgatatccacattgcacaccattggctt
attctgcacggacgttatgtttgtgtagccagaagccccaaatgcgacgtttgtgaaatt
acttatatgtgcaggtacttcgaacgtttaaccgcccaaaacgaaagagataaactaaaa
gcttaa
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