Pedobacter riviphilus: H9N25_02360
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Entry
H9N25_02360 CDS
T08657
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03030
DNA replication
prk03410
Base excision repair
prk03420
Nucleotide excision repair
prk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9N25_02360 (ligA)
03410 Base excision repair
H9N25_02360 (ligA)
03420 Nucleotide excision repair
H9N25_02360 (ligA)
03430 Mismatch repair
H9N25_02360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prk03032
]
H9N25_02360 (ligA)
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_02360 (ligA)
Enzymes [BR:
prk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9N25_02360 (ligA)
DNA replication proteins [BR:
prk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9N25_02360 (ligA)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9N25_02360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9N25_02360 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9N25_02360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9N25_02360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
HHH_3
RNA_ligase
Dna2
Auto_anti-p27
Nlig-Ia
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QNR85349
UniProt:
A0ABX6TIK8
LinkDB
All DBs
Position
complement(604973..606985)
Genome browser
AA seq
670 aa
AA seq
DB search
MSLTAIKEEMDALVAELNQHNYNYYVLAMPTIGDYEFDKKLKRLTELEKANPDLADPNSP
TQRVGGDITKNFVTVNHKYPMLSLGNTYNEQDLRDFDERIRKAIGDNFEYVCELKFDGLS
ISLTYENGKLLRAVTRGDGAKGDDVTNNVKTIHTIPHQIKSTIAPEHFEIRGEIFMHKAA
FLRLNAAREELGEIPYANPRNFASGTIKMQDSKEVAKRPLDGFIYFLYTDKNEFKTHWES
LNAVKDWGFHVCEHNRLVSNIDAVLEFIHHWENERFKLSYDIDGIVIKVNSYAQQQELGF
TSKSPRWAISYKYKAAEVETVLEKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIDRLDLHEGDTVYVEKGGEIIPKIIKVNLDKRLPGAIKVHYLHHCPECGTELIRKEGEA
VHYCPNDEGCPPQIVGKIQHFISRKAMNIDGLGDETIETFYKHGLVRHISDLYTLHQKSD
QLKTLDRFGERSIENMLTGIEKSKEMPFEKVLFGLGIRYVGETVAKKTAAGVKNIDNLSK
ATVEELITIDEIGQRIAESIVEYFGKSEHLQQVELLKLAGLQFEIEEKVITLDSDRLIGK
TFVISGVFENFSRDELKDMIEANGGKMLSGISGKLNYLVAGDNMGPSKLEKANKLNVPII
SDAELLEMIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaactgcaataaaagaagaaatggatgccctggtggccgaattaaaccagcac
aattacaattattatgtgctggctatgcctaccattggtgattatgagtttgataaaaaa
ttaaagcgcctgaccgagctcgaaaaagcaaatcctgatttggccgatccgaattcgcct
acgcagcgggttggtggcgatatcaccaaaaattttgttaccgtaaaccataaatacccc
atgttatcgttggggaatacctataacgaacaagatctccgtgattttgatgaacgcatc
cgtaaagcgattggcgacaatttcgaatatgtttgtgagttaaaatttgatggcctctcc
atcagtcttacttacgaaaatggcaaacttttacgtgcggttacccgtggtgatggcgca
aaaggtgatgatgtaactaacaatgtcaaaaccatccataccatccctcaccaaatcaaa
tcgaccattgcccctgaacatttcgaaatccgtggggagatttttatgcataaagctgct
tttttacgactaaatgctgcccgcgaagaacttggtgaaatcccctatgcaaatccccga
aactttgcatcgggcaccataaaaatgcaagacagcaaggaagtagctaaacggccctta
gatggttttatttatttcttgtacaccgataaaaatgaattcaaaacccattgggaaagt
ttaaatgccgtaaaagattggggtttccatgtttgcgagcataaccgactagtttctaac
atcgatgctgtgctggaatttatccatcattgggaaaacgaacgttttaaactaagttac
gatattgatggcattgtaatcaaagtaaatagttatgcacaacaacaagaattgggtttc
acctccaaatctccacgttgggccatttcatataaatacaaagcagcagaggttgaaact
gttttggaaaaagtaacctatcaggtaggcagaacaggtgcagttacgccagttgctaat
ttaaaacctgtattattggccggcactaccgttaaacgtgccactctgcacaatgcaaac
gagatagatcgtttagatttacatgaaggtgataccgtttatgttgaaaaaggtggtgag
attatcccgaaaatcattaaagtaaatcttgataaacggttaccaggagccatcaaagtg
cattatcttcatcattgtcctgaatgtggaaccgaactgatcagaaaagagggtgaagcg
gtacactactgccctaatgatgaaggttgtccaccgcagattgtaggtaaaattcagcat
ttcatttcacgcaaggccatgaatattgatgggcttggcgacgaaaccatcgaaaccttt
tacaaacatggccttgtaaggcacatcagtgatttatataccctgcatcaaaaatcggat
caactgaaaaccttagaccgtttcggagaacgatcgatcgagaacatgctcaccggaatt
gaaaaatcgaaggaaatgcctttcgagaaagtactttttggcttgggtatccgatatgtt
ggcgaaacagtggcaaagaaaactgccgctggcgtaaagaatatcgacaacctttctaag
gctactgttgaggaattaatcaccattgatgaaatcggtcagcggattgctgagagtatt
gttgagtattttggaaaatctgagcatttacagcaggtagaattattaaaattagccgga
ttacagtttgaaattgaagaaaaagtaattacgcttgatagtgataggcttattggaaaa
acattcgtaatttcgggcgtttttgaaaactttagtcgtgatgagctaaaagatatgatt
gaggccaatggaggcaagatgctgagcggtatttcgggtaaattgaattacctggtagcc
ggcgataatatgggcccatcgaaactggaaaaagcgaataagctaaatgttccgatcatc
agcgatgccgaacttttagagatgataaaataa
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