Pedobacter riviphilus: H9N25_17100
Help
Entry
H9N25_17100 CDS
T08657
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
prk
Pedobacter riviphilus
Pathway
prk01501
beta-Lactam resistance
prk01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
H9N25_17100
01503 Cationic antimicrobial peptide (CAMP) resistance
H9N25_17100
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
prk02000
]
H9N25_17100
01504 Antimicrobial resistance genes [BR:
prk01504
]
H9N25_17100
Transporters [BR:
prk02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
H9N25_17100
Antimicrobial resistance genes [BR:
prk01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
H9N25_17100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
EMC4
Motif
Other DBs
NCBI-ProteinID:
QNR83648
LinkDB
All DBs
Position
4168278..4171388
Genome browser
AA seq
1036 aa
AA seq
DB search
MSISTTSIKRPVLAIVMNLLIVLFGIIGYTFLGVREYPSIDPTVVSVRTSYPGANSDIIE
SQITEPLEKSINSIDGIRNISSSSNQGTSNITIEFNLDKNIEEAANDVRDKVSQAARTLP
KDIDGLPVVSKADANSDPILSMTIQSDKRNTLELSDFAENVIADRIQTIPGVSSVQIQGQ
RKYAMRIWMDPNKLSAYGLTSQDIVTALDNENVELPSGKITGATTELTVKTLGKLTNESE
FNNLILKADSNQVVKLKDVGYAVLGPENEETILRESGRPMVAIAIIPQPGANYLDISKEF
YKRFDKLKADIPQDIKLKVALDNTLFIKRSVTEVAETIGLSLVLVILIIYLFFRDWAIAF
RPLIDIPVSLIFTFFIMYAFGFSINVLSLLAIVLATGLVVDDGIVVTENIFKKVEEGMSP
FEAAIKGSNEIFFAVISISITLASVFLPVIFLQGFVGRLFREFGVVIGAAVLVSAFVSLT
LTPMLNAYLMKKGEHKPSRFYNWTEPYFIKLNDAYESNLNKFLDKRWLSIPIIIVCMGLI
FLFWKVLPKETAPYDDRSAINISASTPEGASFAYTDQFIMKLNQLVIDSVPEKNVNITIT
SPSFGGSGAVNSGFVRMGLTDPETRKRSQKDIADMLTRVTKKYTEGKTIVSQQPTISVGR
RGGLPISYIIQAQNFEKLREKIPLFMDAVSKDPTFTVSDVNLKFNKPEINLTIDRDKAKN
LGVSISAIAQTLNLGLSGQRFSYFFMNGKQYQVIGQFDRGDRKDPLDLSSVYVRNDKGEL
VQLDNVVTAKEESSPPQLYRNNRFIAATVSAGLAPGKSIGEGIDAMDAISKKVLDETFST
DLSGESRDFKESSSNTFFAFGLALLLVYLILSAQFESFKDPIIIILTVPMAVAGAFLSLW
LCGQSWNIFSQIGTIMLIGLVTKNGILIVEFANQLKEKGIAIPQAIREAAVSRLRPILMT
SLAIAIGALPIALALGAAAKSRMSMGTVIVGGTLFSLVLTLFVIPAIYSYWAKPYKPNKE
LKEAHRFEQEALHTEE
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgagtatttcaaccacgagtataaaaaggccggttttggccattgtgatgaacttattg
attgtccttttcgggataatcggctatacctttttaggtgtacgcgagtatccatctatc
gaccccacggtggtttcggtaagaacttcctatcctggtgccaactcagatattatcgaa
tcgcaaattaccgaacctttagaaaaatcgatcaactccattgatgggatccgaaatatt
tcttcatcaagcaaccagggaacaagcaatatcaccatagagtttaacctcgataaaaat
atagaagaagccgcgaatgatgtgcgtgacaaagtatcgcaggctgcccgtaccttacct
aaagatattgacggtttaccggtagtaagtaaggctgatgccaactctgacccgatttta
tcgatgacgatccagagcgataaacgcaatacactggaattaagtgattttgctgaaaac
gtaattgccgaccgtatccaaaccattccgggggtaagtagtgtacaaatccagggtcaa
aggaaatatgccatgcgtatctggatggatcccaataaactaagtgcttacggcttaacc
tcgcaggatattgttactgcattagacaatgaaaacgtagagcttccatcaggaaaaatc
accggcgctactaccgaactaacagttaaaaccctgggaaaactaaccaacgaaagcgag
tttaataacttaatcttaaaagccgacagcaatcaggtagttaaactaaaagatgttggt
tatgcggttttaggaccagaaaacgaagaaaccattctacgtgaatcgggcaggccaatg
gtggccattgccattatccctcagcccggagccaattatctcgatatcagtaaagagttt
tacaaacgttttgataaattaaaagccgatatcccacaggatattaaattgaaagttgca
ttagacaatacccttttcatcaagcgttcggtaaccgaagttgccgagactattggttta
tcactggtattggtaattttgatcatatatctctttttcagagattgggccattgctttt
agacctttaatcgatatcccggtatctttaatttttactttcttcatcatgtacgccttc
ggcttttcaatcaatgtattgagtttattggccattgtactggctacaggattggtggta
gatgatggtattgtggttaccgaaaatatatttaaaaaagttgaagaaggcatgtcgcct
ttcgaggcagccattaaaggatcaaatgaaatcttttttgctgtaatttcgatttccatt
acccttgcgtccgtatttttaccggtaattttcttacagggctttgtgggccgtttattt
agagagtttggcgtggtaataggtgccgcggtactggtatctgcctttgtatcactcact
ttaacaccgatgttaaatgcctacctgatgaaaaagggtgaacataaaccatccagattt
tacaactggacagaaccctattttataaaattaaatgatgcatacgaatctaacctgaac
aaatttttggataaaagatggctttccattccaattattatagtgtgtatggggcttatt
ttcttattctggaaggttttaccaaaagaaaccgccccttatgacgatagaagtgcaatc
aatatcagtgcaagcactcccgaaggtgcctcctttgcctatactgatcagtttattatg
aaactgaatcagttggtaattgattcagttcccgaaaaaaacgtaaacattaccattact
tcgccaagttttggtggttcgggtgcggtaaactctggttttgtaagaatgggtttaaca
gatcccgaaacgcgtaaacgttcgcaaaaagacattgccgatatgctcacccgggtaacc
aaaaaatataccgaaggtaaaaccattgtgagccaacagccaaccatttcagtaggtcgc
cgtggcggattacccatcagttatattatccaggcccaaaatttcgaaaaactaagagag
aaaatccctttgtttatggatgcggtttcgaaagacccaacattcaccgtatcagacgta
aacctgaaatttaacaagcctgaaattaacttgaccatcgacagggataaggccaaaaat
ttaggtgtttctatatctgctattgcacaaaccttaaatttaggattaagtggtcaaagg
ttttcgtatttcttcatgaatggaaaacaataccaggtaattggtcagttcgatcgtgga
gaccggaaggatccattagatttaagttctgtttatgtacgtaatgataagggtgagttg
gttcagctagacaatgtggttacggctaaagaagaaagtagtccgccacagctgtacagg
aacaaccgctttattgcggcaactgtttcggcaggcttagcaccgggaaaaagtattggc
gaaggtatagatgccatggatgccatttctaaaaaagtattagacgaaactttctctacc
gatttaagtggagaatctcgggattttaaagaaagctcttcaaataccttctttgcattc
ggtttggcgctccttctggtttatttaattctttcggcacagtttgagagctttaaagat
cccattatcatcattttaactgtacccatggccgttgccggtgcatttttatcgctctgg
ttatgtggccaaagctggaatatcttcagccagatcggtaccattatgcttattggcttg
gtaaccaaaaatggtattttaattgttgagtttgctaaccagctaaaagaaaaagggatt
gcgattcctcaagctatacgtgaagctgctgtttcgcgtttgcgcccaattttaatgacc
agcttagccattgcgattggagctttaccaattgcccttgctttaggtgccgctgcaaaa
agcagaatgagtatgggaaccgtaattgtaggtggaacattgttctctttggttttaacc
ttatttgtaataccagccatttactcttactgggccaaaccgtacaaaccgaataaagaa
ttaaaagaagcccatcgttttgaacaagaagctttacatacagaagaataa
DBGET
integrated database retrieval system
